PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47951-48000 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | * | 66.7171 | 53.1325 | 89.6341 | 77.6871 | 441 | 389 | 441 | 51 | 46 | 90.1961 | |
| eyeh-varpipe | INDEL | D16_PLUS | * | * | 59.3408 | 53.1250 | 67.2039 | 51.2916 | 3604 | 3180 | 3586 | 1750 | 1709 | 97.6571 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 59.1118 | 53.1250 | 66.6194 | 50.7504 | 952 | 840 | 940 | 471 | 467 | 99.1507 | |
| qzeng-custom | SNP | * | map_l250_m0_e0 | homalt | 69.0753 | 53.1002 | 98.7988 | 95.2759 | 334 | 295 | 329 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 59.4318 | 53.0864 | 67.5000 | 54.5455 | 43 | 38 | 54 | 26 | 25 | 96.1538 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 60.5212 | 53.0761 | 70.3956 | 56.0815 | 509 | 450 | 516 | 217 | 206 | 94.9309 | |
| anovak-vg | INDEL | D16_PLUS | HG002complexvar | * | 63.7181 | 53.0736 | 79.7034 | 53.6711 | 872 | 771 | 860 | 219 | 154 | 70.3196 | |
| ckim-isaac | SNP | ti | map_l125_m2_e0 | homalt | 69.3312 | 53.0727 | 99.9503 | 64.5277 | 6028 | 5330 | 6028 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 69.1382 | 53.0726 | 99.1525 | 27.6074 | 95 | 84 | 117 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.0796 | 53.0658 | 77.7518 | 54.5745 | 476 | 421 | 332 | 95 | 46 | 48.4211 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 56.6887 | 53.0607 | 60.8492 | 45.3700 | 11806 | 10444 | 12611 | 8114 | 6224 | 76.7069 | |
| ckim-isaac | SNP | ti | map_l125_m2_e1 | homalt | 69.3119 | 53.0546 | 99.9342 | 64.5595 | 6079 | 5379 | 6079 | 4 | 4 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | homalt | 69.0476 | 53.0488 | 98.8636 | 85.5104 | 261 | 231 | 261 | 3 | 1 | 33.3333 | |
| ckim-isaac | SNP | tv | map_l100_m2_e1 | homalt | 69.3075 | 53.0424 | 99.9595 | 61.1858 | 4934 | 4368 | 4934 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_siren | hetalt | 69.1293 | 53.0364 | 99.2424 | 95.1860 | 131 | 116 | 131 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | * | map_l150_m0_e0 | * | 69.2458 | 53.0336 | 99.7343 | 81.0939 | 6381 | 5651 | 6381 | 17 | 4 | 23.5294 | |
| ckim-isaac | SNP | tv | map_l100_m2_e0 | homalt | 69.2951 | 53.0280 | 99.9591 | 61.2002 | 4886 | 4328 | 4886 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.0372 | 53.0172 | 77.7273 | 49.0151 | 246 | 218 | 342 | 98 | 96 | 97.9592 | |
| ckim-isaac | SNP | ti | map_l250_m2_e1 | het | 69.1304 | 53.0161 | 99.3186 | 92.2279 | 1749 | 1550 | 1749 | 12 | 1 | 8.3333 | |
| ckim-isaac | SNP | ti | map_l250_m2_e0 | het | 69.1244 | 53.0117 | 99.3092 | 92.1654 | 1725 | 1529 | 1725 | 12 | 1 | 8.3333 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | het | 68.6425 | 53.0105 | 97.3494 | 80.9546 | 405 | 359 | 404 | 11 | 4 | 36.3636 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 59.1149 | 52.9755 | 66.8639 | 88.9180 | 454 | 403 | 452 | 224 | 193 | 86.1607 | |
| ciseli-custom | SNP | tv | map_l250_m0_e0 | het | 59.1512 | 52.9720 | 66.9623 | 96.1499 | 303 | 269 | 302 | 149 | 7 | 4.6980 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 67.5892 | 52.9680 | 93.3602 | 88.9531 | 464 | 412 | 464 | 33 | 32 | 96.9697 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 56.4171 | 52.9438 | 60.3781 | 34.2544 | 9667 | 8592 | 10315 | 6769 | 5257 | 77.6629 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 53.3898 | 52.9412 | 53.8462 | 99.5165 | 9 | 8 | 7 | 6 | 5 | 83.3333 | |
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e0 | * | 66.6667 | 52.9412 | 90.0000 | 94.4751 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | * | 62.0690 | 52.9412 | 75.0000 | 36.8421 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | homalt | 69.2308 | 52.9412 | 100.0000 | 91.3043 | 18 | 16 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 69.2308 | 52.9412 | 100.0000 | 98.0176 | 9 | 8 | 9 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | * | 66.6667 | 52.9412 | 90.0000 | 54.5455 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 47.1671 | 52.9412 | 42.5287 | 85.0772 | 9 | 8 | 37 | 50 | 1 | 2.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.2857 | 52.9412 | 81.8182 | 97.0667 | 9 | 8 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 54.4885 | 52.9412 | 56.1290 | 51.1555 | 261 | 232 | 261 | 204 | 201 | 98.5294 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | homalt | 57.1429 | 52.9412 | 62.0690 | 85.5721 | 18 | 16 | 18 | 11 | 6 | 54.5455 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 54.5455 | 52.9412 | 56.2500 | 93.9440 | 45 | 40 | 45 | 35 | 16 | 45.7143 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1579 | 52.9412 | 24.1379 | 86.1022 | 27 | 24 | 21 | 66 | 2 | 3.0303 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.0690 | 52.9412 | 75.0000 | 99.6461 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | het | 62.0690 | 52.9412 | 75.0000 | 93.5135 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 66.2142 | 52.8967 | 88.4937 | 95.5535 | 420 | 374 | 423 | 55 | 7 | 12.7273 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 69.1892 | 52.8926 | 100.0000 | 93.1660 | 128 | 114 | 128 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | * | 59.1682 | 52.8736 | 67.1642 | 96.2232 | 46 | 41 | 45 | 22 | 19 | 86.3636 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 58.1944 | 52.8736 | 64.7059 | 67.8030 | 46 | 41 | 55 | 30 | 29 | 96.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 56.6451 | 52.8614 | 61.0122 | 54.6408 | 1949 | 1738 | 1953 | 1248 | 1228 | 98.3974 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 65.7529 | 52.8540 | 86.9801 | 38.4187 | 963 | 859 | 481 | 72 | 43 | 59.7222 | |
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | * | 61.2798 | 52.8513 | 72.9065 | 39.3574 | 4773 | 4258 | 4954 | 1841 | 1725 | 93.6991 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 63.5703 | 52.8321 | 79.7871 | 32.1688 | 3134 | 2798 | 11092 | 2810 | 2788 | 99.2171 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 69.1293 | 52.8226 | 100.0000 | 93.1414 | 131 | 117 | 131 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 68.9886 | 52.8205 | 99.4208 | 56.5071 | 515 | 460 | 515 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | * | 65.1571 | 52.8145 | 85.0279 | 85.1378 | 760 | 679 | 761 | 134 | 106 | 79.1045 | |