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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 952 953 954 955 956 957 958 959 960 ... 1720 1721 » 47751-47800 / 86044 show all
gduggal-bwaplat	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	68.0328	54.2991	91.0658	88.7322	3486	2934	3486	342	80	23.3918
ckim-isaac	INDEL	*	map_l250_m2_e0	het	69.7358	54.2857	97.4790	97.5555	114	96	116	3	3	100.0000
ciseli-custom	INDEL	*	map_l250_m2_e0	het	58.1040	54.2857	62.5000	97.7123	114	96	115	69	33	47.8261
jpowers-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	65.2672	54.2857	81.8182	88.5417	19	16	18	4	4	100.0000
gduggal-bwaplat	SNP	ti	map_l150_m2_e1	*	70.2141	54.2827	99.3818	90.4903	11249	9474	11253	70	25	35.7143
ciseli-custom	INDEL	*	map_l150_m2_e1	homalt	63.5484	54.2683	76.6571	91.7065	267	225	266	81	59	72.8395
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	56.7953	54.2639	59.5745	64.3309	35462	29889	35420	24035	23631	98.3191
jpowers-varprowl	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	56.7953	54.2639	59.5745	64.3309	35462	29889	35420	24035	23631	98.3191
ciseli-custom	INDEL	*	map_l150_m2_e0	homalt	63.4799	54.2620	76.4706	91.7215	261	220	260	80	59	73.7500
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	69.0451	54.2606	94.9038	89.2027	987	832	987	53	38	71.6981
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	69.0451	54.2606	94.9038	89.2027	987	832	987	53	38	71.6981
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	65.1709	54.2531	81.5900	69.4864	8451	7126	8323	1878	1704	90.7348
gduggal-bwafb	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	67.1080	54.2510	87.9518	61.8098	134	113	219	30	30	100.0000
jmaeng-gatk	SNP	ti	map_l250_m1_e0	*	69.7263	54.2477	97.5648	96.1076	2484	2095	2484	62	7	11.2903
gduggal-snapplat	INDEL	I1_5	func_cds	het	52.4590	54.2373	50.7937	72.0000	32	27	32	31	0	0.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	70.3297	54.2373	100.0000	61.4286	32	27	27	0	0
gduggal-snapplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	52.5642	54.2299	50.9978	81.1743	500	422	690	663	17	2.5641
ckim-isaac	INDEL	I1_5	map_l150_m2_e0	homalt	69.8718	54.2289	98.1982	86.5942	109	92	109	2	0	0.0000
ckim-isaac	INDEL	*	map_l250_m1_e0	het	69.6080	54.2105	97.2222	97.4636	103	87	105	3	3	100.0000
ckim-gatk	SNP	tv	map_l250_m2_e0	*	69.3914	54.1985	96.4198	96.4303	1562	1320	1562	58	1	1.7241
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	70.0793	54.1899	99.1525	26.2500	97	82	117	1	1	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	70.2899	54.1899	100.0000	31.7647	97	82	116	0	0
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	63.5899	54.1867	76.9418	62.7693	19828	16764	22724	6810	2991	43.9207
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	69.9400	54.1784	98.6348	79.3006	577	488	578	8	7	87.5000
gduggal-snapplat	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	65.7127	54.1731	83.4992	45.7734	1058	895	1007	199	131	65.8291
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	67.3943	54.1667	89.1697	75.4215	494	418	494	60	57	95.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	57.0116	54.1667	60.1719	83.5842	208	176	210	139	136	97.8417
gduggal-bwaplat	INDEL	D16_PLUS	map_l100_m2_e0	het	69.3333	54.1667	96.2963	96.6871	26	22	26	1	1	100.0000
gduggal-bwaplat	INDEL	D6_15	map_l100_m0_e0	homalt	70.2703	54.1667	100.0000	92.8962	13	11	13	0	0
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	68.4211	54.1667	92.8571	90.2098	13	11	13	1	1	100.0000
ckim-isaac	INDEL	D6_15	HG002compoundhet	homalt	40.0881	54.1667	31.8182	65.3543	13	11	14	30	29	96.6667
qzeng-custom	INDEL	I1_5	map_l250_m0_e0	*	65.8625	54.1667	84.0000	99.1992	13	11	21	4	3	75.0000
mlin-fermikit	INDEL	I1_5	map_l125_m2_e1	*	67.6724	54.1379	90.2299	81.0664	471	399	471	51	46	90.1961
ckim-vqsr	SNP	ti	map_l250_m2_e1	het	69.7793	54.1376	98.1319	97.0902	1786	1513	1786	34	0	0.0000
ckim-vqsr	SNP	tv	map_l125_m2_e1	*	69.8938	54.1334	98.6002	89.6003	9017	7640	9016	128	1	0.7813
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	58.0405	54.1246	62.5672	55.8642	35371	29980	43558	26060	19700	75.5948
anovak-vg	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	58.0405	54.1246	62.5672	55.8642	35371	29980	43558	26060	19700	75.5948
gduggal-bwaplat	SNP	ti	map_l150_m2_e0	*	70.0796	54.1244	99.3737	90.4802	11102	9410	11106	70	25	35.7143
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	56.8616	54.1076	59.9109	50.1524	11144	9452	11168	7473	5485	73.3976
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	54.1073	0.0000	0.0000	2582	2190	0	0	0
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	65.6064	54.0984	83.3333	66.0377	33	28	15	3	3	100.0000
ckim-isaac	INDEL	D1_5	map_l250_m2_e1	het	69.4952	54.0984	97.1429	97.2741	66	56	68	2	2	100.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	64.6148	54.0919	80.2207	60.1084	1236	1049	1890	466	171	36.6953
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	67.2635	54.0570	89.0090	75.3662	493	419	494	61	58	95.0820
ckim-isaac	INDEL	D1_5	map_l125_m0_e0	homalt	70.1754	54.0541	100.0000	79.5396	80	68	80	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	67.6759	54.0541	90.4762	58.8235	20	17	19	2	2	100.0000
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	54.0541	0.0000	0.0000	20	17	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	62.5000	54.0541	74.0741	77.3109	20	17	20	7	7	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	70.1754	54.0541	100.0000	66.6667	20	17	20	0	0
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	47.8556	54.0432	42.9393	43.9068	675	574	672	893	863	96.6405

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