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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 950 951 952 953 954 955 956 957 958 ... 1720 1721 » 47651-47700 / 86044 show all
mlin-fermikit	SNP	tv	map_l100_m2_e0	het	70.4610	54.8457	98.5073	60.6122	8653	7124	8645	131	2	1.5267
ckim-isaac	INDEL	D1_5	map_l150_m2_e1	homalt	70.6494	54.8387	99.2701	83.9013	136	112	136	1	1	100.0000
anovak-vg	INDEL	D16_PLUS	HG002complexvar	het	65.7371	54.8329	82.0546	48.1457	607	500	631	138	95	68.8406
ckim-isaac	SNP	*	map_l125_m0_e0	*	70.7547	54.8207	99.7466	75.5092	10627	8758	10627	27	5	18.5185
ckim-gatk	SNP	tv	map_l150_m1_e0	homalt	70.8020	54.8150	99.9538	81.0192	2163	1783	2163	1	0	0.0000
ghariani-varprowl	INDEL	I16_PLUS	*	*	60.9624	54.8063	68.6764	63.4694	3495	2882	3497	1595	1576	98.8088
ciseli-custom	INDEL	D6_15	map_l150_m1_e0	*	55.9441	54.7945	57.1429	94.0171	40	33	40	30	13	43.3333
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.2119	54.7872	90.3509	80.9683	103	85	103	11	10	90.9091
gduggal-bwaplat	INDEL	D1_5	map_l125_m0_e0	het	70.5224	54.7826	98.9529	96.3515	189	156	189	2	0	0.0000
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	33.5766	54.7619	24.2105	97.0652	23	19	23	72	1	1.3889
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	65.7143	54.7619	82.1429	95.6923	23	19	23	5	0	0.0000
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	48.7545	54.7591	43.9366	94.6836	466	385	471	601	36	5.9900
ckim-vqsr	SNP	*	map_l125_m2_e0	*	70.4819	54.7482	98.9056	88.7400	25580	21143	25577	283	6	2.1201
ciseli-custom	INDEL	*	map_l250_m1_e0	het	57.5615	54.7368	60.6936	97.5902	104	86	105	68	32	47.0588
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	63.8421	54.7304	76.5939	75.6642	8799	7278	8770	2680	2299	85.7836
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	63.8421	54.7304	76.5939	75.6642	8799	7278	8770	2680	2299	85.7836
gduggal-bwaplat	INDEL	I6_15	map_l125_m1_e0	*	70.7317	54.7170	100.0000	95.6652	29	24	29	0	0
gduggal-bwaplat	INDEL	I6_15	map_l125_m2_e0	*	70.7317	54.7170	100.0000	96.1892	29	24	29	0	0
gduggal-bwaplat	INDEL	I6_15	map_l125_m2_e1	*	70.7317	54.7170	100.0000	96.3057	29	24	29	0	0
mlin-fermikit	INDEL	*	map_l100_m0_e0	*	65.4035	54.7025	81.3093	79.7697	855	708	857	197	137	69.5431
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	54.7020	0.0000	0.0000	2542	2105	0	0	0
ciseli-custom	INDEL	D6_15	map_l125_m1_e0	het	57.0736	54.6875	59.6774	93.7183	35	29	37	25	4	16.0000
ckim-isaac	SNP	*	map_l150_m2_e1	*	70.6272	54.6818	99.7000	78.0346	17613	14597	17614	53	14	26.4151
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	*	58.9928	54.6667	64.0625	54.2857	41	34	41	23	22	95.6522
eyeh-varpipe	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	65.1949	54.6559	80.7692	61.1940	135	112	189	45	43	95.5556
gduggal-bwaplat	INDEL	D1_5	map_l100_m0_e0	homalt	70.5000	54.6512	99.2958	90.2204	141	117	141	1	0	0.0000
ghariani-varprowl	INDEL	I16_PLUS	map_siren	*	59.4937	54.6512	65.2778	81.5385	47	39	47	25	24	96.0000
ckim-isaac	SNP	*	map_l150_m2_e0	*	70.6023	54.6496	99.7079	77.9961	17407	14445	17408	51	12	23.5294
gduggal-snapvard	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	0.0000	54.6445	0.0000	0.0000	8424	6992	0	0	0
ckim-isaac	INDEL	D6_15	map_siren	het	69.0327	54.6429	93.7107	81.3380	153	127	149	10	8	80.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	66.7366	54.6392	85.7143	3.4483	53	44	24	4	4	100.0000
gduggal-bwaplat	SNP	tv	map_l100_m0_e0	*	70.5375	54.6373	99.4907	88.8156	6056	5028	6056	31	10	32.2581
gduggal-snapplat	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	55.7555	54.6245	56.9343	95.0071	691	574	702	531	51	9.6045
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	68.3908	54.5894	91.5323	59.3443	226	188	227	21	15	71.4286
ckim-gatk	SNP	tv	map_l250_m2_e1	*	69.6890	54.5610	96.4242	96.4387	1591	1325	1591	59	1	1.6949
gduggal-bwaplat	INDEL	*	map_l150_m1_e0	*	70.4293	54.5590	99.3197	95.9257	730	608	730	5	1	20.0000
gduggal-snapplat	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	61.1186	54.5495	69.4865	69.7213	8597	7163	10095	4433	1247	28.1299
gduggal-snapvard	INDEL	*	map_l100_m0_e0	hetalt	0.0000	54.5455	0.0000	0.0000	18	15	0	0	0
gduggal-snapvard	INDEL	*	map_l125_m0_e0	hetalt	0.0000	54.5455	0.0000	0.0000	6	5	0	0	0
ckim-isaac	INDEL	D1_5	map_l150_m2_e0	homalt	70.4000	54.5455	99.2481	84.0144	132	110	132	1	1	100.0000
ckim-isaac	INDEL	D1_5	map_l250_m2_e0	het	69.8630	54.5455	97.1429	97.2167	66	55	68	2	2	100.0000
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	67.9245	54.5455	90.0000	84.1897	36	30	36	4	0	0.0000
ckim-isaac	INDEL	I1_5	map_l150_m1_e0	homalt	70.1299	54.5455	98.1818	84.2632	108	90	108	2	0	0.0000
ckim-isaac	INDEL	I6_15	map_l100_m1_e0	hetalt	70.5882	54.5455	100.0000	82.1918	12	10	13	0	0
ckim-isaac	INDEL	I6_15	map_l100_m2_e0	hetalt	70.5882	54.5455	100.0000	84.1463	12	10	13	0	0
ckim-isaac	INDEL	I6_15	map_l100_m2_e1	hetalt	70.5882	54.5455	100.0000	84.7059	12	10	13	0	0
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	66.0791	54.5455	83.7981	68.9868	528	440	631	122	64	52.4590
eyeh-varpipe	INDEL	*	map_l125_m0_e0	hetalt	70.5882	54.5455	100.0000	94.3694	6	5	25	0	0
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	69.2308	54.5455	94.7368	83.3333	18	15	36	2	2	100.0000
mlin-fermikit	INDEL	I16_PLUS	map_l100_m0_e0	*	57.1429	54.5455	60.0000	86.1111	6	5	6	4	2	50.0000

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