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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 945 946 947 948 949 950 951 952 953 ... 1720 1721 » 47401-47450 / 86044 show all
gduggal-bwavard	INDEL	I16_PLUS	*	*	58.4101	56.2490	60.7439	65.3100	3587	2790	3593	2322	1708	73.5573
jmaeng-gatk	SNP	ti	map_l250_m2_e1	*	71.3857	56.2254	97.7397	96.1904	2854	2222	2854	66	8	12.1212
gduggal-snapfb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	53.4225	56.2232	50.8876	80.9255	131	102	86	83	33	39.7590
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	66.9909	56.2201	82.8667	28.6733	235	183	1243	257	257	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	56.8463	56.2189	57.4879	72.4734	113	88	119	88	85	96.5909
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	57.9193	56.2153	59.7299	62.4801	36735	28612	56563	38135	29523	77.4171
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	57.9193	56.2153	59.7299	62.4801	36735	28612	56563	38135	29523	77.4171
ghariani-varprowl	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	63.3305	56.2021	72.5296	71.5411	367	286	367	139	118	84.8921
gduggal-bwavard	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	71.9457	56.1837	100.0000	55.9889	159	124	158	0	0
gduggal-snapplat	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	64.1957	56.1798	74.8799	61.8437	4700	3666	6078	2039	1497	73.4183
ckim-isaac	INDEL	I6_15	HG002complexvar	hetalt	70.4127	56.1733	94.3226	46.2179	687	536	731	44	30	68.1818
ckim-gatk	SNP	ti	map_l250_m2_e0	*	71.3054	56.1701	97.6058	96.1011	2813	2195	2813	69	9	13.0435
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	60.4335	56.1688	65.3989	55.6013	692	540	705	373	177	47.4531
jmaeng-gatk	SNP	tv	map_l150_m2_e1	homalt	71.9219	56.1684	99.9570	81.5898	2322	1812	2322	1	1	100.0000
gduggal-bwafb	INDEL	D6_15	map_l100_m2_e1	hetalt	69.8368	56.1644	92.3077	80.3030	41	32	12	1	1	100.0000
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	70.1745	56.1567	93.5185	58.4615	301	235	303	21	15	71.4286
ckim-isaac	INDEL	I1_5	map_l125_m0_e0	homalt	71.1111	56.1404	96.9697	81.1429	64	50	64	2	0	0.0000
jpowers-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	62.0650	56.1404	69.3878	99.4106	32	25	34	15	8	53.3333
mlin-fermikit	SNP	ti	map_siren	hetalt	71.9101	56.1404	100.0000	66.6667	32	25	32	0	0
qzeng-custom	INDEL	I1_5	map_l250_m2_e1	*	70.3456	56.1404	94.1748	98.0570	64	50	97	6	4	66.6667
anovak-vg	INDEL	D16_PLUS	*	*	64.9199	56.1321	76.9701	52.6377	3808	2976	3780	1131	815	72.0601
gduggal-bwaplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	69.7828	56.1178	92.2449	67.9389	1353	1058	1356	114	34	29.8246
ckim-gatk	SNP	tv	map_l150_m0_e0	*	71.0339	56.1092	96.7755	93.2891	2342	1832	2341	78	7	8.9744
gduggal-bwaplat	SNP	*	map_l100_m1_e0	hetalt	71.8750	56.0976	100.0000	90.3361	23	18	23	0	0
gduggal-bwaplat	SNP	tv	map_l100_m1_e0	hetalt	71.8750	56.0976	100.0000	90.3361	23	18	23	0	0
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	69.6011	56.0976	91.6667	72.4138	23	18	22	2	0	0.0000
gduggal-bwavard	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	69.6970	56.0976	92.0000	93.0939	23	18	23	2	2	100.0000
mlin-fermikit	INDEL	*	map_l150_m0_e0	homalt	61.1296	56.0976	67.1533	85.8617	92	72	92	45	37	82.2222
ckim-isaac	SNP	*	map_l100_m1_e0	hetalt	71.8750	56.0976	100.0000	75.7895	23	18	23	0	0
ckim-isaac	SNP	tv	map_l100_m1_e0	hetalt	71.8750	56.0976	100.0000	75.7895	23	18	23	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	56.7901	56.0976	57.5000	80.9524	23	18	23	17	16	94.1176
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	66.9912	56.0811	83.1715	93.2356	249	195	257	52	22	42.3077
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	45.0912	56.0811	37.7029	22.3084	83	65	302	499	460	92.1844
ckim-gatk	SNP	tv	map_l150_m2_e1	homalt	71.8426	56.0716	99.9569	82.3233	2318	1816	2318	1	0	0.0000
ciseli-custom	INDEL	I1_5	map_l250_m2_e0	het	54.4118	56.0606	52.8571	97.3242	37	29	37	33	26	78.7879
ciseli-custom	INDEL	I1_5	map_l250_m2_e1	het	54.4118	56.0606	52.8571	97.3987	37	29	37	33	26	78.7879
ckim-isaac	INDEL	D16_PLUS	HG002complexvar	homalt	68.6813	56.0554	88.6486	67.8819	162	127	164	21	5	23.8095
ciseli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	65.6393	56.0506	79.1857	70.3212	8731	6846	8480	2229	1542	69.1790
jmaeng-gatk	SNP	ti	map_l250_m2_e0	*	71.2437	56.0503	97.7368	96.1742	2807	2201	2807	65	8	12.3077
qzeng-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	0.0000	56.0364	0.0000	0.0000	246	193	0	0	0
gduggal-bwaplat	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	69.9678	56.0261	93.1470	80.3055	1032	810	1033	76	17	22.3684
jmaeng-gatk	SNP	*	map_l150_m1_e0	homalt	71.8022	56.0188	99.9683	79.3360	6315	4958	6315	2	2	100.0000
mlin-fermikit	SNP	*	map_l100_m0_e0	homalt	62.9127	56.0069	71.7609	49.3097	6508	5112	6508	2561	2415	94.2991
qzeng-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	59.6849	56.0000	63.8889	83.7838	14	11	23	13	5	38.4615
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	67.7419	56.0000	85.7143	83.1325	14	11	12	2	2	100.0000
ghariani-varprowl	INDEL	I6_15	map_l150_m1_e0	*	62.2222	56.0000	70.0000	95.3052	14	11	14	6	5	83.3333
ghariani-varprowl	INDEL	I6_15	map_l150_m2_e0	*	62.2222	56.0000	70.0000	95.9267	14	11	14	6	5	83.3333
gduggal-snapplat	INDEL	D6_15	segdup	homalt	71.7949	56.0000	100.0000	93.8416	28	22	21	0	0
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	*	47.5921	56.0000	41.3793	69.7917	14	11	12	17	1	5.8824
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	71.7949	56.0000	100.0000	51.7241	14	11	14	0	0

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