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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 90 91 92 93 94 95 96 97 98 ... 1720 1721 » 4651-4700 / 86044 show all
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.9836	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4862	100.0000	98.9777	68.5196	1065	0	1065	11	11	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	66.6667	100.0000	50.0000	98.4000	1	0	1	1	1	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.6269	100.0000	99.2565	66.2060	267	0	267	2	2	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	100.0000	66.6667	91.8919	2	0	2	1	0	0.0000
ckim-vqsr	INDEL	I1_5	map_l100_m0_e0	hetalt	100.0000	100.0000	100.0000	93.0233	9	0	9	0	0
ckim-vqsr	INDEL	I1_5	map_l100_m0_e0	homalt	99.2840	100.0000	98.5782	81.2278	208	0	208	3	2	66.6667
ckim-vqsr	INDEL	I1_5	map_l125_m0_e0	hetalt	100.0000	100.0000	100.0000	95.7447	4	0	4	0	0
ckim-vqsr	INDEL	I1_5	map_l125_m0_e0	homalt	99.1304	100.0000	98.2759	86.0744	114	0	114	2	1	50.0000
ckim-vqsr	INDEL	I1_5	map_l125_m1_e0	hetalt	100.0000	100.0000	100.0000	93.0612	17	0	17	0	0
ckim-vqsr	INDEL	I1_5	map_l125_m2_e0	hetalt	100.0000	100.0000	100.0000	93.2143	19	0	19	0	0
ckim-vqsr	INDEL	I1_5	map_l125_m2_e1	hetalt	100.0000	100.0000	100.0000	93.3333	19	0	19	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m0_e0	hetalt	100.0000	100.0000	100.0000	95.5224	3	0	3	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m0_e0	homalt	99.2593	100.0000	98.5294	89.5385	67	0	67	1	1	100.0000
ckim-vqsr	INDEL	I1_5	map_l150_m1_e0	hetalt	100.0000	100.0000	100.0000	95.1087	9	0	9	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m2_e0	hetalt	100.0000	100.0000	100.0000	95.8140	9	0	9	0	0
ckim-vqsr	INDEL	I1_5	map_l150_m2_e1	hetalt	100.0000	100.0000	100.0000	95.4545	10	0	10	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m0_e0	homalt	94.7368	100.0000	90.0000	96.9880	9	0	9	1	1	100.0000
ckim-vqsr	INDEL	I1_5	map_l250_m1_e0	hetalt	100.0000	100.0000	100.0000	97.8947	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m1_e0	homalt	98.8764	100.0000	97.7778	94.4853	44	0	44	1	1	100.0000
ckim-vqsr	INDEL	I1_5	map_l250_m2_e0	hetalt	100.0000	100.0000	100.0000	98.3051	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m2_e0	homalt	98.9011	100.0000	97.8261	95.2675	45	0	45	1	1	100.0000
ckim-vqsr	INDEL	I1_5	map_l250_m2_e1	hetalt	100.0000	100.0000	100.0000	98.3333	2	0	2	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m2_e1	homalt	98.9247	100.0000	97.8723	95.2716	46	0	46	1	1	100.0000
ckim-vqsr	INDEL	I1_5	tech_badpromoters	*	100.0000	100.0000	100.0000	54.1667	22	0	22	0	0
ckim-vqsr	INDEL	I1_5	tech_badpromoters	het	100.0000	100.0000	100.0000	46.6667	8	0	8	0	0
ckim-vqsr	INDEL	I1_5	tech_badpromoters	hetalt	100.0000	100.0000	100.0000	50.0000	1	0	1	0	0
ckim-vqsr	INDEL	I1_5	tech_badpromoters	homalt	100.0000	100.0000	100.0000	58.0645	13	0	13	0	0
ckim-vqsr	INDEL	I6_15	HG002compoundhet	homalt	18.5075	100.0000	10.1974	63.1068	31	0	31	273	272	99.6337
ckim-vqsr	INDEL	I6_15	func_cds	het	100.0000	100.0000	100.0000	44.1860	24	0	24	0	0
ckim-vqsr	INDEL	I6_15	func_cds	homalt	96.7742	100.0000	93.7500	40.7407	15	0	15	1	1	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	92.9134	100.0000	86.7647	76.7123	59	0	59	9	9	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.0480	100.0000	96.1708	73.2150	653	0	653	26	25	96.1538
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	96.0000	100.0000	92.3077	69.5312	36	0	36	3	3	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4595	100.0000	98.9247	70.0000	92	0	92	1	1	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	100.0000	100.0000	100.0000	72.3982	122	0	122	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	70.6897	68	0	68	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	88.8889	100.0000	80.0000	79.4521	24	0	24	6	6	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	94.1964	100.0000	89.0295	69.3402	211	0	211	26	25	96.1538
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	94.9495	100.0000	90.3846	67.5000	188	0	188	20	19	95.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.5453	100.0000	91.4706	70.3833	311	0	311	29	28	96.5517
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	95.9248	100.0000	92.1687	77.1034	153	0	153	13	12	92.3077
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	100.0000	100.0000	100.0000	81.5789	49	0	49	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	100.0000	100.0000	100.0000	99.8656	2	0	2	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	100.0000	100.0000	100.0000	99.3243	2	0	2	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5392	100.0000	99.0826	67.8940	216	0	216	2	2	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	100.0000	100.0000	100.0000	64.2424	59	0	59	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	67.5000	13	0	13	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	het		100.0000		100.0000	1	0	0	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	100.0000	100.0000	100.0000	35.0000	12	0	13	0	0

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