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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 932 933 934 935 936 937 938 939 940 ... 1720 1721 » 46751-46800 / 86044 show all
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	75.0000	60.0000	100.0000	99.6795	3	2	3	0	0
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	60.8751	59.9982	61.7781	66.5944	39207	26140	39525	24454	17134	70.0662
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	60.8751	59.9982	61.7781	66.5944	39207	26140	39525	24454	17134	70.0662
ckim-gatk	SNP	*	map_l250_m2_e0	het	73.8651	59.9923	96.0839	96.7509	3116	2078	3116	127	10	7.8740
ciseli-custom	INDEL	*	map_l125_m0_e0	*	65.7143	59.9773	72.6648	92.6716	529	353	529	199	111	55.7789
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	74.3814	59.9765	97.8927	91.3619	511	341	511	11	10	90.9091
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	64.0613	59.9713	68.7500	40.2750	418	279	418	190	185	97.3684
asubramanian-gatk	SNP	tv	map_siren	het	74.9187	59.9671	99.8022	78.0195	17156	11453	17153	34	10	29.4118
mlin-fermikit	SNP	*	map_l100_m1_e0	*	72.2095	59.9657	90.7360	51.7425	43417	28986	43409	4432	3924	88.5379
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	59.9593	59.9593	59.9593	55.8744	295	197	295	197	173	87.8173
ckim-isaac	SNP	tv	map_l125_m2_e1	het	74.8404	59.9545	99.5595	75.8491	6327	4226	6329	28	7	25.0000
ckim-isaac	INDEL	*	map_siren	hetalt	73.9743	59.9190	96.6443	83.7336	148	99	144	5	4	80.0000
gduggal-snapfb	INDEL	*	HG002complexvar	hetalt	65.6662	59.9081	72.6490	79.8155	2216	1483	1097	413	281	68.0387
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	73.9245	59.9078	96.5035	42.1053	130	87	138	5	5	100.0000
gduggal-bwaplat	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	72.9905	59.8984	93.4066	85.0088	3655	2447	3655	258	42	16.2791
ckim-isaac	INDEL	D1_5	map_l150_m0_e0	*	74.2489	59.8616	97.7401	92.7340	173	116	173	4	1	25.0000
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	73.2771	59.8485	94.4751	88.1311	79	53	171	10	9	90.0000
jmaeng-gatk	SNP	*	map_l250_m2_e0	het	73.7629	59.8383	96.1336	96.8561	3108	2086	3108	125	9	7.2000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	74.4949	59.8361	98.6667	81.4815	73	49	74	1	1	100.0000
gduggal-bwafb	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	70.5314	59.8361	85.8824	65.4472	73	49	73	12	12	100.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	65.4311	59.8361	72.1805	46.5863	73	49	96	37	37	100.0000
ckim-isaac	SNP	tv	map_l125_m2_e0	het	74.7458	59.8353	99.5540	75.8427	6248	4194	6250	28	7	25.0000
ckim-isaac	SNP	ti	map_l125_m1_e0	*	74.8103	59.8330	99.7896	70.2803	17552	11783	17552	37	7	18.9189
anovak-vg	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	*	63.5093	59.8218	67.6813	39.7409	21890	14702	30217	14429	11301	78.3214
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	71.4286	59.8086	88.6525	84.5902	125	84	125	16	8	50.0000
gduggal-bwaplat	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	72.7768	59.8071	92.9293	81.5471	186	125	184	14	12	85.7143
ciseli-custom	SNP	ti	map_l250_m2_e1	het	64.3765	59.8060	69.7034	93.5598	1973	1326	1974	858	20	2.3310
gduggal-bwaplat	INDEL	D16_PLUS	HG002complexvar	het	74.0091	59.8013	97.0717	73.7610	662	445	663	20	10	50.0000
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	58.4075	59.7906	57.0870	76.5044	571	384	584	439	331	75.3986
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	*	62.9779	59.7881	66.5273	42.2033	14672	9868	14642	7367	7111	96.5250
ckim-isaac	SNP	tv	map_l100_m0_e0	het	74.7468	59.7757	99.7229	73.2042	4317	2905	4319	12	3	25.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	73.3411	59.7723	94.8795	89.6250	315	212	315	17	16	94.1176
ciseli-custom	INDEL	*	map_l125_m2_e0	homalt	67.2566	59.7641	76.8971	88.5455	456	307	456	137	107	78.1022
mlin-fermikit	INDEL	D6_15	map_l150_m2_e0	*	67.7170	59.7561	78.1250	86.7769	49	33	50	14	10	71.4286
gduggal-bwaplat	INDEL	D1_5	map_l150_m1_e0	het	74.4186	59.7510	98.6301	96.0087	288	194	288	4	1	25.0000
ciseli-custom	SNP	ti	map_l250_m2_e0	het	64.2691	59.7419	69.5388	93.5208	1944	1310	1945	852	20	2.3474
gduggal-snapfb	INDEL	D6_15	HG002complexvar	hetalt	67.4067	59.7236	77.3585	57.4866	605	408	123	36	35	97.2222
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	59.6473	59.7203	59.5745	39.9758	12300	8296	17724	12027	10545	87.6777
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	62.9012	59.7110	66.4516	34.9559	1033	697	1030	520	432	83.0769
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	73.7755	59.7109	96.5075	47.3586	2189	1477	2183	79	55	69.6203
jpowers-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	73.8504	59.7109	96.7642	46.8551	2189	1477	2183	73	54	73.9726
hfeng-pmm3	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	74.7720	59.7087	100.0000	57.0934	123	83	124	0	0
qzeng-custom	INDEL	I1_5	map_l150_m0_e0	homalt	73.9161	59.7015	97.0149	91.4650	40	27	65	2	1	50.0000
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	51.2934	59.7015	44.9612	67.1338	120	81	116	142	139	97.8873
ckim-isaac	INDEL	D1_5	map_l100_m0_e0	homalt	74.7573	59.6899	100.0000	74.1176	154	104	154	0	0
anovak-vg	INDEL	I1_5	map_l150_m0_e0	*	58.6797	59.6591	57.7320	93.8118	105	71	112	82	51	62.1951
anovak-vg	INDEL	D1_5	map_l250_m1_e0	homalt	73.0707	59.6491	94.2857	96.1957	34	23	33	2	2	100.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	69.5297	59.6491	83.3333	65.9574	238	161	240	48	46	95.8333
ckim-isaac	INDEL	I1_5	map_l250_m2_e1	*	74.7253	59.6491	100.0000	97.1536	68	46	68	0	0
mlin-fermikit	INDEL	D1_5	map_l250_m1_e0	homalt	64.7619	59.6491	70.8333	88.7324	34	23	34	14	14	100.0000

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