PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46651-46700 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.4194 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.1631 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2603 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.3392 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.5904 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 97.6378 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | * | 75.0000 | 60.0000 | 100.0000 | 97.8469 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e0 | * | 75.0000 | 60.0000 | 100.0000 | 98.8806 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | * | 75.0000 | 60.0000 | 100.0000 | 98.8971 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.3784 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.4155 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | het | 74.2268 | 60.0000 | 97.2973 | 96.7965 | 36 | 24 | 36 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | tech_badpromoters | het | 75.0000 | 60.0000 | 100.0000 | 68.4211 | 6 | 4 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | func_cds | hetalt | 42.8571 | 60.0000 | 33.3333 | 57.1429 | 3 | 2 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 60.0000 | 100.0000 | 99.6733 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 97.4684 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.8075 | 60.0000 | 86.3636 | 87.9781 | 21 | 14 | 19 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 92.8058 | 9 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 93.6306 | 9 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 96.5909 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 96.8421 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 70.5882 | 60.0000 | 85.7143 | 99.7433 | 12 | 8 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | C1_5 | * | * | 60.0000 | 100.0000 | 6 | 4 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | het | 70.0000 | 60.0000 | 84.0000 | 86.8421 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | het | 70.0000 | 60.0000 | 84.0000 | 87.9808 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 95.4128 | 3 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 95.6140 | 3 | 2 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 60.0000 | 75.0000 | 94.9367 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 72.0000 | 60.0000 | 90.0000 | 92.8058 | 9 | 6 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 46.1538 | 60.0000 | 37.5000 | 97.0803 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 46.1538 | 60.0000 | 37.5000 | 97.1119 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 60.9836 | 60.0000 | 62.0000 | 58.6311 | 603 | 402 | 682 | 418 | 306 | 73.2057 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 60.0000 | 0.0000 | 0.0000 | 3 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 94.2308 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | het | 54.5455 | 60.0000 | 50.0000 | 62.5000 | 6 | 4 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m0_e0 | * | 62.0192 | 60.0000 | 64.1791 | 85.8351 | 9 | 6 | 43 | 24 | 16 | 66.6667 | |
| gduggal-snapfb | INDEL | I6_15 | func_cds | homalt | 75.0000 | 60.0000 | 100.0000 | 30.7692 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 68.5714 | 60.0000 | 80.0000 | 99.8924 | 6 | 4 | 4 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.7768 | 12 | 8 | 12 | 6 | 5 | 83.3333 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 61.1538 | 60.0000 | 62.3529 | 96.1223 | 54 | 36 | 53 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.5714 | 60.0000 | 80.0000 | 90.8425 | 21 | 14 | 20 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 54.5455 | 60.0000 | 50.0000 | 97.7941 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 54.5455 | 60.0000 | 50.0000 | 97.8873 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 98.1982 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | homalt | 60.0000 | 100.0000 | 3 | 2 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 98.0952 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 98.1735 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | het | 70.5882 | 60.0000 | 85.7143 | 58.8235 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 80.0000 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |