PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46601-46650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8000 | 9 | 6 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.0233 | 9 | 6 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.7326 | 3 | 2 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m0_e0 | * | 69.2308 | 60.0000 | 81.8182 | 94.9309 | 9 | 6 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e0 | het | 60.0000 | 60.0000 | 60.0000 | 95.7627 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l250_m2_e1 | het | 60.0000 | 60.0000 | 60.0000 | 95.9677 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m0_e0 | * | 72.0000 | 60.0000 | 90.0000 | 93.7500 | 9 | 6 | 9 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 97.1963 | 3 | 2 | 3 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 97.3451 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5882 | 60.0000 | 85.7143 | 97.7492 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.4286 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.6429 | 3 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | * | func_cds | hetalt | 75.0000 | 60.0000 | 100.0000 | 33.3333 | 3 | 2 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6055 | 3 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 54.5455 | 60.0000 | 50.0000 | 85.1064 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.6667 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 54.5455 | 60.0000 | 50.0000 | 86.7925 | 3 | 2 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.8905 | 6 | 4 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 58.5366 | 60.0000 | 57.1429 | 98.3683 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 58.5366 | 60.0000 | 57.1429 | 98.4091 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | SNP | * | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 71.1864 | 60.0000 | 87.5000 | 90.3614 | 12 | 8 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 96.4286 | 3 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 97.1510 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| anovak-vg | INDEL | * | decoy | * | 67.7419 | 60.0000 | 77.7778 | 99.9553 | 6 | 4 | 7 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | homalt | 64.2857 | 60.0000 | 69.2308 | 98.0168 | 15 | 10 | 18 | 8 | 8 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 60.0000 | 75.0000 | 96.5217 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 96.6387 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.3066 | 6 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | * | 63.1579 | 60.0000 | 66.6667 | 88.4615 | 9 | 6 | 16 | 8 | 3 | 37.5000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m1_e0 | * | 61.4458 | 60.0000 | 62.9630 | 91.0299 | 15 | 10 | 17 | 10 | 2 | 20.0000 | |
| anovak-vg | INDEL | I6_15 | map_l150_m2_e0 | * | 61.4458 | 60.0000 | 62.9630 | 92.1283 | 15 | 10 | 17 | 10 | 2 | 20.0000 | |
| cchapple-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 75.0000 | 60.0000 | 100.0000 | 99.6774 | 3 | 2 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 60.0000 | 75.0000 | 98.8827 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 60.0000 | 75.0000 | 98.8950 | 3 | 2 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.7401 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.8610 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.0588 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.2028 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 99.0354 | 3 | 2 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 99.0712 | 3 | 2 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m0_e0 | * | 72.0000 | 60.0000 | 90.0000 | 95.5157 | 9 | 6 | 9 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.2973 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |