PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4551-4600 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | func_cds | het | 99.1453 | 100.0000 | 98.3051 | 41.0000 | 59 | 0 | 58 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9002 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8958 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9874 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9394 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8053 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 27.2727 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1014 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.9732 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 85.1695 | 35 | 0 | 35 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 76.0181 | 53 | 0 | 53 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.1579 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.0820 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 88.7218 | 23 | 0 | 23 | 7 | 7 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.3832 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.5736 | 100.0000 | 89.7059 | 91.4033 | 61 | 0 | 61 | 7 | 7 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.8033 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 83.7456 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 100.0000 | 100.0000 | 3 | 0 | 0 | 0 | 0 | ||||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6087 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 2 | 0 | 3 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |