PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45801-45850 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | * | 77.3562 | 63.7097 | 98.4424 | 89.5098 | 316 | 180 | 316 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.5395 | 63.7097 | 84.2105 | 99.9318 | 79 | 45 | 80 | 15 | 12 | 80.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 68.8773 | 63.7081 | 74.9595 | 62.4506 | 5326 | 3034 | 5550 | 1854 | 1409 | 75.9978 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 68.8773 | 63.7081 | 74.9595 | 62.4506 | 5326 | 3034 | 5550 | 1854 | 1409 | 75.9978 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 63.0961 | 63.7037 | 62.5000 | 90.4573 | 86 | 49 | 90 | 54 | 13 | 24.0741 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.4016 | 63.6945 | 98.6259 | 40.8078 | 6672 | 3803 | 6316 | 88 | 82 | 93.1818 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.6225 | 63.6808 | 96.1659 | 75.3638 | 3384 | 1930 | 3386 | 135 | 45 | 33.3333 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | * | 72.9303 | 63.6686 | 85.3453 | 43.1989 | 3051 | 1741 | 3040 | 522 | 491 | 94.0613 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.0146 | 63.6573 | 82.8979 | 66.4923 | 2482 | 1417 | 2443 | 504 | 406 | 80.5556 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | homalt | 69.2990 | 63.6512 | 76.0467 | 84.7739 | 781 | 446 | 781 | 246 | 199 | 80.8943 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 63.6364 | 70.0000 | 99.4592 | 7 | 4 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 58.3686 | 63.6364 | 53.9062 | 70.1284 | 133 | 76 | 138 | 118 | 36 | 30.5085 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 95.6790 | 7 | 4 | 7 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 52.1569 | 63.6364 | 44.1860 | 82.8000 | 42 | 24 | 38 | 48 | 24 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 66.6667 | 63.6364 | 70.0000 | 92.5373 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e0 | * | 66.6667 | 63.6364 | 70.0000 | 93.5065 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m2_e1 | * | 66.6667 | 63.6364 | 70.0000 | 93.6306 | 7 | 4 | 7 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.6924 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 76.2943 | 63.6364 | 95.2381 | 76.1364 | 21 | 12 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | het | 77.4539 | 63.6364 | 98.9362 | 93.0060 | 91 | 52 | 93 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 75.3363 | 63.6364 | 92.3077 | 82.1918 | 28 | 16 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 50.5670 | 63.6364 | 41.9512 | 31.6667 | 14 | 8 | 86 | 119 | 118 | 99.1597 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 67.0995 | 63.6364 | 70.9612 | 72.1865 | 1372 | 784 | 1410 | 577 | 119 | 20.6239 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 56.0000 | 63.6364 | 50.0000 | 66.6667 | 7 | 4 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.2317 | 63.6364 | 98.2143 | 47.5546 | 210 | 120 | 495 | 9 | 6 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 68.8525 | 63.6364 | 75.0000 | 92.5134 | 21 | 12 | 21 | 7 | 5 | 71.4286 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | het | 57.4627 | 63.6364 | 52.3810 | 95.5975 | 7 | 4 | 11 | 10 | 5 | 50.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.1163 | 63.6364 | 66.6667 | 99.3328 | 7 | 4 | 6 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 77.7778 | 63.6364 | 100.0000 | 87.8788 | 7 | 4 | 8 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.6258 | 63.6364 | 93.1818 | 93.3131 | 42 | 24 | 41 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 67.3077 | 63.6364 | 71.4286 | 98.2673 | 7 | 4 | 10 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 63.9594 | 63.6364 | 64.2857 | 94.1909 | 7 | 4 | 9 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 61.7647 | 63.6364 | 60.0000 | 94.1176 | 7 | 4 | 9 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 61.7647 | 63.6364 | 60.0000 | 94.1860 | 7 | 4 | 9 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 75.4127 | 63.6364 | 92.5373 | 98.3941 | 42 | 24 | 62 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 75.4491 | 63.6364 | 92.6471 | 98.4019 | 42 | 24 | 63 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 77.7778 | 63.6364 | 100.0000 | 81.6092 | 14 | 8 | 16 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 73.6842 | 63.6364 | 87.5000 | 99.5068 | 7 | 4 | 7 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 73.6842 | 63.6364 | 87.5000 | 77.1429 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 73.6842 | 63.6364 | 87.5000 | 84.9057 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 73.6842 | 63.6364 | 87.5000 | 86.2069 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 73.6842 | 63.6364 | 87.5000 | 86.2069 | 7 | 4 | 7 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6669 | 63.6190 | 84.7150 | 61.4963 | 668 | 382 | 654 | 118 | 77 | 65.2542 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 77.6790 | 63.6186 | 99.7178 | 29.4964 | 4564 | 2610 | 4593 | 13 | 13 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 63.6095 | 0.0000 | 0.0000 | 860 | 492 | 0 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 77.4165 | 63.6080 | 98.8826 | 71.6925 | 5913 | 3383 | 5575 | 63 | 56 | 88.8889 | |
| ckim-vqsr | SNP | tv | map_l150_m1_e0 | het | 77.1500 | 63.6050 | 98.0249 | 91.7841 | 4418 | 2528 | 4417 | 89 | 0 | 0.0000 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | * | 77.0822 | 63.5950 | 97.8298 | 88.5344 | 8116 | 4646 | 8114 | 180 | 23 | 12.7778 | |