PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45601-45650 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | map_l250_m2_e1 | * | 69.2947 | 64.8053 | 74.4524 | 92.2088 | 5176 | 2811 | 5167 | 1773 | 350 | 19.7406 | |
| ckim-vqsr | SNP | * | map_l150_m2_e0 | het | 78.1444 | 64.8041 | 98.4007 | 91.6936 | 13047 | 7086 | 13044 | 212 | 2 | 0.9434 | |
| qzeng-custom | SNP | * | map_l250_m1_e0 | het | 75.1142 | 64.7950 | 89.3431 | 96.3888 | 3081 | 1674 | 3060 | 365 | 301 | 82.4658 | |
| ciseli-custom | INDEL | I1_5 | map_siren | * | 68.4975 | 64.7920 | 72.6525 | 80.4862 | 1947 | 1058 | 1942 | 731 | 614 | 83.9945 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.3098 | 64.7887 | 76.8595 | 44.7489 | 92 | 50 | 93 | 28 | 26 | 92.8571 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | * | 78.2708 | 64.7834 | 98.8506 | 91.4496 | 344 | 187 | 344 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | hetalt | 77.8589 | 64.7773 | 97.5610 | 66.3244 | 160 | 87 | 160 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.3824 | 64.7764 | 99.2239 | 34.3044 | 811 | 441 | 895 | 7 | 4 | 57.1429 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.8766 | 64.7541 | 80.7595 | 87.1336 | 316 | 172 | 319 | 76 | 1 | 1.3158 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 78.1075 | 64.7471 | 98.4152 | 46.2255 | 10816 | 5889 | 10060 | 162 | 132 | 81.4815 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 78.1075 | 64.7471 | 98.4152 | 46.2255 | 10816 | 5889 | 10060 | 162 | 132 | 81.4815 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.0161 | 64.7448 | 98.1308 | 54.0773 | 1763 | 960 | 105 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | HG002complexvar | homalt | 74.1849 | 64.7446 | 86.8481 | 42.3529 | 786 | 428 | 766 | 116 | 108 | 93.1034 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 77.7331 | 64.7163 | 97.3046 | 78.9683 | 365 | 199 | 361 | 10 | 6 | 60.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.0031 | 64.7102 | 86.4125 | 82.4649 | 882 | 481 | 884 | 139 | 8 | 5.7554 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 77.9097 | 64.7065 | 97.8826 | 70.2472 | 12852 | 7010 | 12851 | 278 | 98 | 35.2518 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | het | 78.5714 | 64.7059 | 100.0000 | 88.3929 | 11 | 6 | 13 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7500 | 64.7059 | 73.3333 | 97.4576 | 11 | 6 | 11 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | * | 78.5714 | 64.7059 | 100.0000 | 97.5877 | 11 | 6 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.5714 | 64.7059 | 100.0000 | 89.9543 | 22 | 12 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1285 | 64.7059 | 95.4545 | 93.7143 | 33 | 18 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 64.7059 | 64.7059 | 64.7059 | 99.6822 | 11 | 6 | 11 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 45.4277 | 64.7059 | 35.0000 | 94.0828 | 11 | 6 | 7 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6897 | 64.7059 | 57.1429 | 99.8738 | 11 | 6 | 4 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 96.3333 | 11 | 6 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 78.5714 | 64.7059 | 100.0000 | 88.1720 | 11 | 6 | 11 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 97.4239 | 11 | 6 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.4000 | 64.7059 | 77.1930 | 96.8784 | 44 | 24 | 44 | 13 | 13 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m0_e0 | het | 73.3333 | 64.7059 | 84.6154 | 91.5584 | 11 | 6 | 11 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 67.3913 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 70.0000 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.4706 | 64.7059 | 82.3529 | 96.0465 | 11 | 6 | 14 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | * | 68.7500 | 64.7059 | 73.3333 | 53.1250 | 11 | 6 | 11 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.5714 | 64.7059 | 100.0000 | 98.1293 | 11 | 6 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 72.8477 | 64.7059 | 83.3333 | 95.1613 | 11 | 6 | 10 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 28.5438 | 64.6939 | 18.3115 | 55.1706 | 317 | 173 | 308 | 1374 | 1358 | 98.8355 | |
| qzeng-custom | SNP | * | map_l150_m0_e0 | het | 75.9917 | 64.6851 | 92.0882 | 93.9068 | 5136 | 2804 | 5098 | 438 | 367 | 83.7900 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | * | 69.1818 | 64.6798 | 74.3575 | 92.1767 | 5100 | 2785 | 5092 | 1756 | 343 | 19.5330 | |
| ckim-isaac | SNP | * | map_l100_m1_e0 | * | 78.4897 | 64.6727 | 99.8146 | 63.0504 | 46825 | 25578 | 46832 | 87 | 22 | 25.2874 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | hetalt | 75.3022 | 64.6465 | 90.1639 | 76.8061 | 64 | 35 | 55 | 6 | 2 | 33.3333 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 60.1585 | 64.6439 | 56.2551 | 36.6040 | 9449 | 5168 | 18693 | 14536 | 11429 | 78.6255 | |
| ckim-vqsr | SNP | tv | map_l150_m2_e1 | het | 77.9198 | 64.6434 | 98.0591 | 92.2018 | 4750 | 2598 | 4749 | 94 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_siren | het | 78.4554 | 64.6317 | 99.8014 | 73.5808 | 58809 | 32182 | 58800 | 117 | 33 | 28.2051 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.7782 | 64.6063 | 83.3167 | 68.8822 | 2519 | 1380 | 2512 | 503 | 427 | 84.8907 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | * | 70.0206 | 64.5902 | 76.4479 | 84.8980 | 197 | 108 | 198 | 61 | 55 | 90.1639 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 78.1643 | 64.5833 | 98.9779 | 55.8315 | 589 | 323 | 581 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.5177 | 64.5833 | 90.9091 | 92.6829 | 31 | 17 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.9566 | 64.5649 | 98.3573 | 34.9800 | 512 | 281 | 479 | 8 | 4 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.9938 | 64.5494 | 83.9802 | 62.7497 | 1189 | 653 | 1190 | 227 | 214 | 94.2731 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | * | 77.8953 | 64.5023 | 98.3073 | 45.7436 | 1510 | 831 | 1510 | 26 | 25 | 96.1538 | |