PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45001-45050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 91.2281 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 92.3077 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 88.5135 | 14 | 7 | 14 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.8873 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 37.6590 | 1078 | 539 | 1225 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 6 | 3 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | het | 63.1579 | 66.6667 | 60.0000 | 93.0991 | 32 | 16 | 33 | 22 | 8 | 36.3636 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | het | 62.2222 | 66.6667 | 58.3333 | 92.7449 | 34 | 17 | 35 | 25 | 10 | 40.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | * | 42.1053 | 66.6667 | 30.7692 | 92.3754 | 8 | 4 | 8 | 18 | 2 | 11.1111 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.8571 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.3488 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.3214 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | homalt | 71.1111 | 66.6667 | 76.1905 | 90.5405 | 16 | 8 | 16 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | map_l150_m0_e0 | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 14 | 7 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.5517 | 14 | 7 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.5342 | 66.6667 | 84.5070 | 97.7222 | 2 | 1 | 60 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 74.2081 | 66.6667 | 83.6735 | 97.8584 | 2 | 1 | 41 | 8 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.1429 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 80.0000 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 85.7143 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 85.7143 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.7742 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.7213 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.9231 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 18 | 9 | 18 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.8750 | 2 | 1 | 2 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 89.1892 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.5926 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.7273 | 2 | 1 | 2 | 2 | 1 | 50.0000 | |