PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44951-45000 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 76.5957 | 66.6667 | 90.0000 | 85.9155 | 10 | 5 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 76.5957 | 66.6667 | 90.0000 | 85.9155 | 10 | 5 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 84.6154 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 2 | 1 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 70.6897 | 14 | 7 | 14 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 85.3659 | 6 | 3 | 6 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 91.2000 | 10 | 5 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 93.6508 | 4 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 88.7097 | 6 | 3 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.3552 | 66.6667 | 95.0139 | 97.4690 | 2 | 1 | 343 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.1364 | 66.6667 | 88.7417 | 97.5582 | 2 | 1 | 134 | 17 | 1 | 5.8824 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.0000 | 66.6667 | 85.7143 | 95.2055 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 26 | 13 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.6667 | 66.6667 | 66.6667 | 63.7584 | 2 | 1 | 36 | 18 | 12 | 66.6667 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 61.5385 | 66.6667 | 57.1429 | 92.6316 | 4 | 2 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 68.2927 | 66.6667 | 70.0000 | 89.5105 | 10 | 5 | 21 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 48.0000 | 66.6667 | 37.5000 | 87.6923 | 2 | 1 | 3 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 66.6667 | 66.6667 | 66.6667 | 89.5899 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.0000 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 66.6667 | 66.6667 | 66.6667 | 89.6875 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.1579 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 92.5926 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 57.1429 | 66.6667 | 50.0000 | 93.1034 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 57.1429 | 66.6667 | 50.0000 | 93.2203 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.1739 | 6 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 71.7949 | 66.6667 | 77.7778 | 99.3080 | 10 | 5 | 14 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 77.2881 | 66.6667 | 91.9355 | 98.3812 | 40 | 20 | 57 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.9921 | 66.6667 | 59.7015 | 56.2092 | 6 | 3 | 40 | 27 | 24 | 88.8889 | |
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | homalt | 66.6667 | 66.6667 | 66.6667 | 57.1429 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.5882 | 66.6667 | 75.0000 | 98.1043 | 6 | 3 | 6 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | * | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.2857 | 6 | 3 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 76.5957 | 66.6667 | 90.0000 | 71.0145 | 20 | 10 | 18 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.4444 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 92.2414 | 34 | 17 | 33 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 74.0741 | 66.6667 | 83.3333 | 97.5510 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.2857 | 4 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.6429 | 6 | 3 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.2475 | 66.6667 | 86.3636 | 89.8148 | 18 | 9 | 19 | 3 | 1 | 33.3333 | |