PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44801-44850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8947 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 52.9412 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 95.5556 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 66.6667 | 66.6667 | 66.6667 | 99.8717 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 66.6667 | 100.0000 | 4 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.3333 | 6 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.8788 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.6048 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_siren | hetalt | 79.1667 | 66.6667 | 97.4359 | 82.5893 | 38 | 19 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 98.3871 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 68.0394 | 66.6667 | 69.4698 | 94.6639 | 2 | 1 | 380 | 167 | 40 | 23.9521 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.3489 | 66.6667 | 62.1868 | 95.0669 | 2 | 1 | 273 | 166 | 40 | 24.0964 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.2607 | 10 | 5 | 10 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.1292 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.4895 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 44.4444 | 66.6667 | 33.3333 | 97.5207 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.7500 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.8718 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 57.1429 | 66.6667 | 50.0000 | 97.1631 | 2 | 1 | 2 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.3043 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.5926 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.5926 | 2 | 1 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.6522 | 4 | 2 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.3077 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.9394 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.1176 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.9091 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.7778 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.6667 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.5484 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 93.7500 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.2353 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4762 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.7778 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.9167 | 2 | 1 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 98.0392 | 2 | 1 | 2 | 0 | 0 | ||
| anovak-vg | INDEL | * | decoy | het | 72.7273 | 66.6667 | 80.0000 | 99.9643 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | decoy | homalt | 70.5882 | 66.6667 | 75.0000 | 99.9345 | 2 | 1 | 3 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 66.6667 | 100.0000 | 98.8095 | 2 | 1 | 1 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | func_cds | * | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 8 | 4 | 8 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 66.6667 | 66.6667 | 96.0526 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |