PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43851-43900 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | het | 82.7586 | 70.5882 | 100.0000 | 90.6977 | 12 | 5 | 12 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.7586 | 70.5882 | 100.0000 | 97.2158 | 12 | 5 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | het | 38.7440 | 70.5882 | 26.6993 | 68.3093 | 600 | 250 | 546 | 1499 | 1487 | 99.1995 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.9679 | 70.5882 | 84.6154 | 95.8861 | 12 | 5 | 11 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.4469 | 70.5882 | 93.5065 | 93.3102 | 72 | 30 | 72 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 92.6554 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.1438 | 70.5882 | 80.3279 | 96.6630 | 48 | 20 | 49 | 12 | 11 | 91.6667 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.7586 | 70.5882 | 100.0000 | 99.6599 | 12 | 5 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 70.5882 | 80.0000 | 99.5336 | 12 | 5 | 12 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | homalt | 81.3559 | 70.5882 | 96.0000 | 90.8759 | 24 | 10 | 24 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 82.0208 | 70.5882 | 97.8723 | 76.7327 | 48 | 20 | 46 | 1 | 0 | 0.0000 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 58.1498 | 70.5882 | 49.4382 | 90.1657 | 72 | 30 | 88 | 90 | 30 | 33.3333 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.1567 | 70.5747 | 92.7492 | 83.3752 | 307 | 128 | 307 | 24 | 4 | 16.6667 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | het | 72.9400 | 70.5593 | 75.4869 | 88.5098 | 1577 | 658 | 1589 | 516 | 305 | 59.1085 | |
| ckim-isaac | SNP | ti | map_siren | homalt | 82.7288 | 70.5560 | 99.9776 | 44.7961 | 26752 | 11164 | 26753 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 81.4677 | 70.5559 | 96.3720 | 80.0416 | 2310 | 964 | 2311 | 87 | 48 | 55.1724 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | hetalt | 82.7225 | 70.5357 | 100.0000 | 83.1169 | 79 | 33 | 78 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m2_e1 | homalt | 81.5445 | 70.5285 | 96.6387 | 89.8225 | 347 | 145 | 460 | 16 | 9 | 56.2500 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.0128 | 70.5263 | 73.5632 | 88.3378 | 67 | 28 | 64 | 23 | 19 | 82.6087 | |
| qzeng-custom | SNP | * | map_l150_m1_e0 | het | 81.0937 | 70.5218 | 95.3942 | 89.4771 | 13622 | 5694 | 13504 | 652 | 548 | 84.0491 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 75.5346 | 70.5119 | 81.3276 | 50.1751 | 5110 | 2137 | 6481 | 1488 | 1088 | 73.1183 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.2369 | 70.5069 | 98.6486 | 35.9307 | 153 | 64 | 146 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 71.6772 | 70.5040 | 72.8901 | 52.2851 | 4281 | 1791 | 4802 | 1786 | 1566 | 87.6820 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 79.5287 | 70.4992 | 91.2109 | 53.4545 | 1864 | 780 | 467 | 45 | 45 | 100.0000 | |
| qzeng-custom | SNP | * | map_l100_m0_e0 | homalt | 82.4060 | 70.4991 | 99.1522 | 62.7863 | 8192 | 3428 | 8070 | 69 | 68 | 98.5507 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | het | 82.6923 | 70.4918 | 100.0000 | 82.5175 | 43 | 18 | 50 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | het | 82.6923 | 70.4918 | 100.0000 | 82.8179 | 43 | 18 | 50 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 78.7229 | 70.4918 | 89.1304 | 63.2000 | 43 | 18 | 41 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 46.7522 | 70.4861 | 34.9754 | 65.3140 | 203 | 85 | 284 | 528 | 66 | 12.5000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 81.3386 | 70.4818 | 96.1491 | 65.8212 | 26714 | 11188 | 26716 | 1070 | 602 | 56.2617 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6476 | 70.4805 | 99.8919 | 47.7991 | 924 | 387 | 924 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.9149 | 70.4805 | 97.7778 | 45.5017 | 308 | 129 | 308 | 7 | 7 | 100.0000 | |
| ciseli-custom | SNP | * | map_l150_m0_e0 | * | 75.3031 | 70.4787 | 80.8364 | 85.2202 | 8480 | 3552 | 8466 | 2007 | 507 | 25.2616 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2908 | 70.4641 | 96.0486 | 65.7173 | 4039 | 1693 | 4035 | 166 | 29 | 17.4699 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 97.3368 | 31 | 13 | 31 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.0930 | 70.4545 | 73.8095 | 97.7600 | 31 | 13 | 31 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 95.9420 | 31 | 13 | 28 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l150_m2_e1 | het | 71.2728 | 70.4545 | 72.1103 | 91.6230 | 651 | 273 | 680 | 263 | 75 | 28.5171 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 79.4872 | 70.4545 | 91.1765 | 96.6732 | 31 | 13 | 31 | 3 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 74.2102 | 70.4505 | 78.3938 | 47.6036 | 8366 | 3509 | 8356 | 2303 | 2257 | 98.0026 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | * | 82.4562 | 70.4418 | 99.4115 | 81.1732 | 51002 | 21401 | 51014 | 302 | 83 | 27.4834 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.4240 | 70.4268 | 96.4912 | 53.1250 | 231 | 97 | 275 | 10 | 8 | 80.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 77.0774 | 70.4225 | 85.1214 | 55.3497 | 350 | 147 | 1087 | 190 | 150 | 78.9474 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 76.0681 | 70.4167 | 82.7057 | 61.6372 | 338 | 142 | 1186 | 248 | 176 | 70.9677 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.6342 | 70.4150 | 99.9847 | 69.7916 | 6550 | 2752 | 6550 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | * | map_l150_m1_e0 | het | 70.8356 | 70.4094 | 71.2670 | 91.2380 | 602 | 253 | 630 | 254 | 71 | 27.9528 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.5706 | 70.3775 | 91.5264 | 68.8371 | 3300 | 1389 | 3316 | 307 | 18 | 5.8632 | |
| gduggal-snapplat | INDEL | * | * | het | 75.6756 | 70.3729 | 81.8427 | 68.5533 | 136617 | 57516 | 150007 | 33280 | 2606 | 7.8305 | |