PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43651-43700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 71.4286 | 90.9091 | 99.2920 | 30 | 12 | 30 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.9231 | 71.4286 | 83.3333 | 99.5242 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.3846 | 71.4286 | 23.5174 | 34.4504 | 115 | 46 | 115 | 374 | 359 | 95.9893 | |
| ckim-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.4496 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | C6_15 | * | * | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | C6_15 | * | het | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.7099 | 5 | 2 | 5 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 97.2973 | 5 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 83.3333 | 71.4286 | 100.0000 | 99.7405 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | tech_badpromoters | het | 83.3333 | 71.4286 | 100.0000 | 70.5882 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 95.6522 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2892 | 71.4286 | 73.1707 | 97.3325 | 30 | 12 | 30 | 11 | 2 | 18.1818 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 83.3333 | 71.4286 | 100.0000 | 70.1613 | 35 | 14 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 71.4286 | 100.0000 | 99.8911 | 15 | 6 | 19 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.6517 | 71.4286 | 87.5000 | 98.7886 | 30 | 12 | 35 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 75.6646 | 71.4286 | 80.4348 | 98.6240 | 30 | 12 | 37 | 9 | 7 | 77.7778 | |
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 93.5323 | 5 | 2 | 13 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 73.1707 | 71.4286 | 75.0000 | 37.5000 | 15 | 6 | 15 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | het | 81.8995 | 71.4286 | 95.9677 | 75.3968 | 90 | 36 | 119 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 76.9231 | 71.4286 | 83.3333 | 96.2264 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 80.0000 | 71.4286 | 90.9091 | 92.0000 | 20 | 8 | 20 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 76.9231 | 71.4286 | 83.3333 | 98.3039 | 20 | 8 | 20 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 76.9231 | 71.4286 | 83.3333 | 99.4902 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 96.1240 | 5 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.6348 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.7539 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 95.9016 | 5 | 2 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.5765 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 98.6971 | 5 | 2 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | homalt | 78.9474 | 71.4286 | 88.2353 | 70.6897 | 15 | 6 | 15 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 94.9495 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | * | 71.5037 | 71.4286 | 71.5789 | 85.3395 | 90 | 36 | 136 | 54 | 37 | 68.5185 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0858 | 71.4286 | 51.8519 | 94.9343 | 10 | 4 | 14 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | het | 61.2245 | 71.4286 | 53.5714 | 94.9183 | 10 | 4 | 15 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7030 | 71.4286 | 18.7500 | 96.3218 | 5 | 2 | 3 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C6_15 | * | * | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | C6_15 | * | het | 71.4286 | 100.0000 | 5 | 2 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 70.1754 | 71.4286 | 68.9655 | 98.1611 | 20 | 8 | 20 | 9 | 2 | 22.2222 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.2213 | 71.4171 | 94.1457 | 64.2321 | 5322 | 2130 | 5339 | 332 | 30 | 9.0361 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 73.1589 | 71.4116 | 74.9939 | 43.9770 | 22846 | 9146 | 33793 | 11268 | 11182 | 99.2368 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.0301 | 71.4070 | 99.1727 | 30.3565 | 1888 | 756 | 1918 | 16 | 11 | 68.7500 | |
| ciseli-custom | INDEL | * | map_siren | * | 74.2881 | 71.4035 | 77.4156 | 83.7506 | 5291 | 2119 | 5296 | 1545 | 1017 | 65.8252 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 70.9708 | 71.4018 | 70.5450 | 38.3153 | 17522 | 7018 | 22276 | 9301 | 8410 | 90.4204 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | * | 70.9648 | 71.4008 | 70.5341 | 93.5272 | 367 | 147 | 383 | 160 | 88 | 55.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.6793 | 71.3911 | 95.4321 | 75.7937 | 5994 | 2402 | 5996 | 287 | 72 | 25.0871 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.8275 | 71.3902 | 98.6286 | 59.1429 | 5320 | 2132 | 5322 | 74 | 14 | 18.9189 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 79.6774 | 71.3873 | 90.1460 | 83.5435 | 247 | 99 | 247 | 27 | 5 | 18.5185 | |