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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 866 867 868 869 870 871 872 873 874 ... 1720 1721 » 43451-43500 / 86044 show all
gduggal-bwafb	INDEL	D16_PLUS	map_l150_m2_e1	*	81.2500	72.2222	92.8571	91.7160	13	5	13	1	1	100.0000
gduggal-snapfb	INDEL	I6_15	map_siren	homalt	82.8025	72.2222	97.0149	78.0328	65	25	65	2	2	100.0000
ghariani-varprowl	INDEL	I6_15	map_siren	homalt	81.7610	72.2222	94.2029	76.1246	65	25	65	4	3	75.0000
anovak-vg	INDEL	*	map_l125_m0_e0	*	71.3287	72.2222	70.4570	90.6359	637	245	663	278	156	56.1151
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	81.2500	72.2222	92.8571	70.2128	13	5	13	1	1	100.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	83.8710	72.2222	100.0000	64.4231	78	30	74	0	0
jpowers-varprowl	INDEL	I6_15	map_siren	homalt	81.7610	72.2222	94.2029	75.1799	65	25	65	4	3	75.0000
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	55.8140	72.1805	45.4976	78.8365	96	37	96	115	111	96.5217
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	82.7930	72.1739	97.0760	60.0467	166	64	166	5	1	20.0000
gduggal-bwaplat	SNP	ti	map_l100_m2_e0	*	83.6206	72.1656	99.3982	81.0322	35333	13628	35344	214	67	31.3084
gduggal-snapplat	INDEL	*	map_l100_m2_e1	*	79.8823	72.1512	89.4689	91.7596	2710	1046	2948	347	39	11.2392
mlin-fermikit	SNP	tv	map_siren	*	81.3085	72.1446	93.1393	50.3116	33136	12794	33125	2440	2002	82.0492
jmaeng-gatk	SNP	*	map_l100_m1_e0	homalt	83.8037	72.1438	99.9590	65.3578	19481	7522	19481	8	8	100.0000
gduggal-snapfb	INDEL	I6_15	*	homalt	78.8948	72.1430	87.0410	39.6459	4501	1738	4480	667	645	96.7016
eyeh-varpipe	INDEL	I6_15	map_l100_m2_e0	het	79.0220	72.1311	87.3684	76.1905	44	17	83	12	10	83.3333
eyeh-varpipe	INDEL	I6_15	map_l100_m2_e1	het	79.0220	72.1311	87.3684	76.4851	44	17	83	12	10	83.3333
ckim-isaac	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	83.2219	72.1186	98.3665	35.2346	1314	508	1385	23	22	95.6522
gduggal-snapvard	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	55.8285	72.0960	45.5506	48.7100	1111	430	3450	4124	3618	87.7304
ckim-isaac	INDEL	*	map_l125_m2_e1	hetalt	81.4312	72.0930	93.5484	92.4939	31	12	29	2	2	100.0000
eyeh-varpipe	INDEL	D6_15	map_l100_m1_e0	*	77.5749	72.0930	83.9590	83.4182	186	72	246	47	43	91.4894
mlin-fermikit	INDEL	D1_5	map_l100_m0_e0	homalt	70.9924	72.0930	69.9248	75.4613	186	72	186	80	74	92.5000
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	83.7838	72.0930	100.0000	72.0000	62	24	63	0	0
gduggal-bwaplat	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	82.2027	72.0883	95.6186	70.2749	5323	2061	5325	244	63	25.8197
gduggal-bwaplat	INDEL	*	map_l100_m1_e0	het	83.2773	72.0805	98.5924	92.9796	1611	624	1611	23	7	30.4348
gduggal-snapfb	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	79.1493	72.0787	87.7579	53.3974	4910	1902	638	89	89	100.0000
gduggal-snapplat	INDEL	*	map_l150_m1_e0	homalt	82.5287	72.0779	96.5241	92.1114	333	129	361	13	0	0.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	80.6843	72.0726	91.6333	55.4102	1311	508	2749	251	244	97.2112
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	80.6843	72.0726	91.6333	55.4102	1311	508	2749	251	244	97.2112
qzeng-custom	INDEL	D1_5	map_l250_m1_e0	het	80.5398	72.0721	91.2621	98.1252	80	31	94	9	8	88.8889
qzeng-custom	SNP	tv	map_l150_m1_e0	*	82.5382	72.0674	96.5687	86.5523	7864	3048	7852	279	236	84.5878
gduggal-bwaplat	INDEL	D6_15	HG002complexvar	hetalt	82.3891	72.0632	96.1691	62.5248	730	283	728	29	27	93.1034
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	79.6906	72.0588	89.1304	56.8075	49	19	82	10	10	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	83.0362	72.0588	97.9592	95.6980	49	19	48	1	1	100.0000
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	79.6748	72.0588	89.0909	96.9846	49	19	49	6	6	100.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	77.1368	72.0532	82.9923	72.5173	11223	4353	45225	9268	7975	86.0488
mlin-fermikit	SNP	ti	map_siren	het	83.4382	72.0464	99.1091	46.3223	44944	17438	44944	404	15	3.7129
ciseli-custom	SNP	ti	map_l125_m1_e0	het	77.4977	72.0300	83.8636	79.8833	13157	5109	13154	2531	72	2.8447
anovak-vg	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	62.2688	72.0280	54.8387	90.2559	103	40	119	98	35	35.7143
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	54.1237	72.0257	43.3492	26.9375	224	87	1271	1661	1654	99.5786
qzeng-custom	SNP	*	map_l100_m0_e0	*	82.6366	72.0228	96.9194	83.3401	23653	9188	23407	744	630	84.6774
qzeng-custom	INDEL	I1_5	map_l100_m2_e0	het	80.9908	72.0050	92.5390	89.7242	571	222	831	67	13	19.4030
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	79.6367	72.0025	89.0817	63.6267	4552	1770	4569	560	555	99.1071
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	79.6367	72.0025	89.0817	63.6267	4552	1770	4569	560	555	99.1071
asubramanian-gatk	INDEL	I6_15	map_l150_m1_e0	*	81.8182	72.0000	94.7368	96.4618	18	7	18	1	1	100.0000
asubramanian-gatk	INDEL	I6_15	map_l150_m2_e0	*	81.8182	72.0000	94.7368	96.8333	18	7	18	1	1	100.0000
egarrison-hhga	INDEL	*	map_l100_m2_e0	hetalt	82.9138	72.0000	97.7273	89.6104	90	35	86	2	1	50.0000
gduggal-snapvard	INDEL	I6_15	map_l150_m1_e0	*	60.8583	72.0000	52.7027	87.7888	18	7	39	35	27	77.1429
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e0	*	61.1650	72.0000	53.1646	88.2789	18	7	42	37	29	78.3784
qzeng-custom	INDEL	I1_5	map_l100_m1_e0	*	81.6840	71.9940	94.3881	86.6528	964	375	1396	83	16	19.2771
eyeh-varpipe	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	76.1646	71.9865	80.8576	48.0795	16017	6233	16537	3915	3818	97.5223

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