PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42701-42750 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.4254 | 74.7368 | 97.0000 | 58.7912 | 284 | 96 | 291 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.5480 | 74.7368 | 97.3244 | 58.8721 | 284 | 96 | 291 | 8 | 7 | 87.5000 | |
| gduggal-snapplat | INDEL | * | map_siren | homalt | 83.6919 | 74.7269 | 95.1011 | 85.8909 | 1984 | 671 | 2116 | 109 | 16 | 14.6789 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 84.9584 | 74.7191 | 98.4496 | 67.6692 | 133 | 45 | 127 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 80.7791 | 74.7144 | 87.9154 | 43.6787 | 10921 | 3696 | 21956 | 3018 | 1053 | 34.8907 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 79.8362 | 74.7126 | 85.7143 | 54.9550 | 845 | 286 | 600 | 100 | 84 | 84.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 85.5263 | 74.7126 | 100.0000 | 99.9004 | 65 | 22 | 64 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 78.1416 | 74.7118 | 81.9014 | 40.1032 | 3046 | 1031 | 3041 | 672 | 667 | 99.2560 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 84.3374 | 74.7117 | 96.8102 | 79.6075 | 3628 | 1228 | 3642 | 120 | 34 | 28.3333 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.2998 | 74.7038 | 96.7245 | 58.1245 | 15386 | 5210 | 15385 | 521 | 324 | 62.1881 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | * | 83.5106 | 74.6755 | 94.7168 | 75.2199 | 2244 | 761 | 2241 | 125 | 111 | 88.8000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.3362 | 74.6667 | 78.0822 | 54.3750 | 56 | 19 | 57 | 16 | 14 | 87.5000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 69.8354 | 74.6667 | 65.5914 | 51.8135 | 56 | 19 | 61 | 32 | 10 | 31.2500 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.6460 | 74.6599 | 90.0744 | 85.4526 | 1317 | 447 | 1452 | 160 | 15 | 9.3750 | |
| ckim-isaac | INDEL | D1_5 | map_siren | homalt | 85.4065 | 74.6575 | 99.7712 | 71.3349 | 872 | 296 | 872 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | het | 84.5433 | 74.6497 | 97.4600 | 66.9103 | 1758 | 597 | 1765 | 46 | 16 | 34.7826 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 84.8488 | 74.6492 | 98.2769 | 53.8272 | 1649 | 560 | 1654 | 29 | 24 | 82.7586 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.6992 | 74.6479 | 85.4839 | 48.7603 | 53 | 18 | 53 | 9 | 7 | 77.7778 | |
| jmaeng-gatk | SNP | * | map_l125_m2_e0 | * | 84.6294 | 74.6420 | 97.7024 | 85.2765 | 34875 | 11848 | 34869 | 820 | 54 | 6.5854 | |
| anovak-vg | INDEL | * | map_l150_m2_e1 | * | 72.7945 | 74.6352 | 71.0425 | 90.5099 | 1074 | 365 | 1104 | 450 | 242 | 53.7778 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | het | 85.1033 | 74.6313 | 98.9938 | 84.0158 | 33852 | 11507 | 33844 | 344 | 11 | 3.1977 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.7498 | 74.6269 | 92.8571 | 85.4167 | 50 | 17 | 52 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002complexvar | hetalt | 85.0270 | 74.6269 | 98.7952 | 62.9464 | 250 | 85 | 246 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.6501 | 74.6171 | 72.7079 | 81.2886 | 682 | 232 | 682 | 256 | 1 | 0.3906 | |
| mlin-fermikit | SNP | * | map_siren | * | 83.3638 | 74.6157 | 94.4357 | 47.0930 | 109109 | 37119 | 109094 | 6428 | 5503 | 85.6098 | |
| gduggal-bwaplat | INDEL | D6_15 | map_siren | homalt | 85.4626 | 74.6154 | 100.0000 | 85.9216 | 97 | 33 | 97 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | segdup | hetalt | 85.0838 | 74.6154 | 98.9691 | 96.9725 | 97 | 33 | 96 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | segdup | hetalt | 81.3718 | 74.6154 | 89.4737 | 97.2915 | 97 | 33 | 34 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | SNP | tv | map_l250_m0_e0 | homalt | 85.4599 | 74.6114 | 100.0000 | 95.3201 | 144 | 49 | 144 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e1 | het | 84.9192 | 74.6057 | 98.5417 | 92.9073 | 946 | 322 | 946 | 14 | 5 | 35.7143 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2423 | 74.6055 | 89.1753 | 53.3280 | 520 | 177 | 519 | 63 | 62 | 98.4127 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | * | 78.3333 | 74.6032 | 82.4561 | 90.1299 | 94 | 32 | 94 | 20 | 19 | 95.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 71.8249 | 74.6024 | 69.2468 | 69.8343 | 1595 | 543 | 1664 | 739 | 192 | 25.9811 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | het | 84.9116 | 74.6019 | 98.5279 | 92.8459 | 937 | 319 | 937 | 14 | 5 | 35.7143 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | * | 72.7100 | 74.5946 | 70.9184 | 96.2235 | 138 | 47 | 139 | 57 | 24 | 42.1053 | |
| ckim-gatk | SNP | * | map_l125_m2_e0 | * | 84.6410 | 74.5907 | 97.8215 | 85.1222 | 34851 | 11872 | 34845 | 776 | 59 | 7.6031 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1142 | 74.5902 | 88.8889 | 51.3514 | 91 | 31 | 128 | 16 | 16 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.0034 | 74.5856 | 75.4258 | 72.2485 | 270 | 92 | 310 | 101 | 98 | 97.0297 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | * | 78.8472 | 74.5840 | 83.6274 | 80.0382 | 14702 | 5010 | 14695 | 2877 | 739 | 25.6865 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 84.4004 | 74.5748 | 97.2080 | 44.1952 | 6095 | 2078 | 6093 | 175 | 173 | 98.8571 | |
| ndellapenna-hhga | INDEL | * | * | hetalt | 84.9841 | 74.5730 | 98.7738 | 62.9843 | 18820 | 6417 | 18044 | 224 | 192 | 85.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | HG002compoundhet | homalt | 64.7761 | 74.5704 | 57.2559 | 81.8487 | 217 | 74 | 217 | 162 | 147 | 90.7407 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.1654 | 74.5662 | 99.2771 | 27.6058 | 1633 | 557 | 1648 | 12 | 9 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | * | 79.4183 | 74.5632 | 84.9497 | 78.4301 | 12420 | 4237 | 12412 | 2199 | 540 | 24.5566 | |
| ndellapenna-hhga | INDEL | * | HG002compoundhet | hetalt | 85.1313 | 74.5631 | 99.1899 | 56.3007 | 18775 | 6405 | 18000 | 147 | 122 | 82.9932 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | homalt | 84.7106 | 74.5614 | 98.0583 | 87.3775 | 170 | 58 | 202 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | INDEL | * | HG002complexvar | homalt | 81.8252 | 74.5588 | 90.6609 | 60.0040 | 20151 | 6876 | 21619 | 2227 | 779 | 34.9798 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.7845 | 74.5493 | 95.6314 | 66.3759 | 1406 | 480 | 1401 | 64 | 53 | 82.8125 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 83.7845 | 74.5493 | 95.6314 | 65.9144 | 1406 | 480 | 1401 | 64 | 57 | 89.0625 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | * | 81.6618 | 74.5446 | 90.2813 | 93.3861 | 1637 | 559 | 1765 | 190 | 25 | 13.1579 | |