PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42351-42400 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 1.0601 | 75.0000 | 0.5338 | 31.6717 | 6 | 2 | 6 | 1118 | 1065 | 95.2594 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.1799 | 75.0000 | 15.8576 | 76.7407 | 93 | 31 | 98 | 520 | 4 | 0.7692 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7003 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 99.6945 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 99.6872 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 91.0714 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.4762 | 3 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 78.5714 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.3855 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 90.6250 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l250_m1_e0 | het | 85.7143 | 75.0000 | 100.0000 | 98.4127 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.7586 | 75.0000 | 92.3077 | 98.1690 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 75.0000 | 75.0000 | 75.0000 | 99.6201 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5526 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 75.0000 | 75.0000 | 99.5418 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 75.0000 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.1326 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.4286 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.5455 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 94.5378 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.6692 | 3 | 1 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 99.5995 | 3 | 1 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 85.7143 | 75.0000 | 100.0000 | 99.5890 | 3 | 1 | 3 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 70.5882 | 75.0000 | 66.6667 | 89.4737 | 6 | 2 | 4 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 89.3617 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 60.0000 | 75.0000 | 50.0000 | 98.1763 | 3 | 1 | 3 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.4615 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.0233 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.5000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 96.7136 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.1429 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.7368 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e1 | het | 82.7586 | 75.0000 | 92.3077 | 95.5172 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 88.8889 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 75.0000 | 100.0000 | 72.7273 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||