PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41451-41500 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | map_siren | homalt | 83.4332 | 77.6923 | 90.0901 | 82.2967 | 101 | 29 | 100 | 11 | 10 | 90.9091 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 86.7834 | 77.6882 | 98.2906 | 84.8576 | 289 | 83 | 345 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.5437 | 77.6835 | 97.6853 | 56.4907 | 6499 | 1867 | 6499 | 154 | 131 | 85.0649 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.2551 | 77.6765 | 99.5283 | 34.8694 | 341 | 98 | 422 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m2_e0 | het | 81.1055 | 77.6699 | 84.8592 | 96.0935 | 240 | 69 | 241 | 43 | 1 | 2.3256 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | * | 81.4941 | 77.6699 | 85.7143 | 87.9676 | 80 | 23 | 102 | 17 | 16 | 94.1176 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | * | 82.5979 | 77.6680 | 88.1960 | 95.0708 | 393 | 113 | 396 | 53 | 2 | 3.7736 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 85.9762 | 77.6671 | 96.2761 | 24.1736 | 546 | 157 | 1060 | 41 | 41 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 68.3237 | 77.6667 | 60.9872 | 71.9758 | 2330 | 670 | 3583 | 2292 | 1410 | 61.5183 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.8336 | 77.6504 | 98.4802 | 88.9449 | 271 | 78 | 324 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.0523 | 77.6490 | 84.7677 | 58.0295 | 24388 | 7020 | 25176 | 4524 | 4294 | 94.9160 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 80.9816 | 77.6471 | 84.6154 | 91.7373 | 66 | 19 | 66 | 12 | 12 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 83.0586 | 77.6471 | 89.2809 | 34.5471 | 660 | 190 | 658 | 79 | 79 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.4172 | 77.6471 | 100.0000 | 57.9832 | 66 | 19 | 50 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | * | 73.9996 | 77.6471 | 70.6794 | 95.9856 | 594 | 171 | 593 | 246 | 53 | 21.5447 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.7448 | 77.6461 | 93.2722 | 41.8494 | 917 | 264 | 915 | 66 | 66 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 67.2347 | 77.6447 | 59.2860 | 62.9451 | 4345 | 1251 | 4683 | 3216 | 1125 | 34.9813 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 58.0656 | 77.6423 | 46.3731 | 78.9760 | 191 | 55 | 179 | 207 | 152 | 73.4300 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 86.1876 | 77.6398 | 96.8504 | 18.5897 | 125 | 36 | 123 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 86.9355 | 77.6393 | 98.7607 | 75.1429 | 21489 | 6189 | 21517 | 270 | 69 | 25.5556 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.9410 | 77.6358 | 98.7805 | 31.0924 | 243 | 70 | 243 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | * | 78.6667 | 77.6316 | 79.7297 | 67.6856 | 59 | 17 | 59 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | * | HG002compoundhet | het | 43.9232 | 77.6258 | 30.6263 | 58.8856 | 3178 | 916 | 2983 | 6757 | 6682 | 98.8900 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | het | 82.4328 | 77.6224 | 87.8788 | 67.1968 | 111 | 32 | 145 | 20 | 18 | 90.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | het | 82.9333 | 77.6224 | 89.0244 | 72.7121 | 111 | 32 | 146 | 18 | 16 | 88.8889 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.8108 | 77.6224 | 91.0714 | 91.0328 | 111 | 32 | 102 | 10 | 3 | 30.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 65.7662 | 77.6219 | 57.0522 | 44.3331 | 11346 | 3271 | 31729 | 23885 | 20828 | 87.2012 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.8608 | 77.6154 | 96.0663 | 66.4017 | 16997 | 4902 | 16973 | 695 | 593 | 85.3237 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.9015 | 77.6154 | 96.1682 | 66.3211 | 16997 | 4902 | 16966 | 676 | 597 | 88.3136 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 85.9772 | 77.6119 | 96.3636 | 94.7267 | 52 | 15 | 53 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l125_m0_e0 | het | 80.9783 | 77.6042 | 84.6591 | 95.8412 | 149 | 43 | 149 | 27 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 87.3874 | 77.6000 | 100.0000 | 66.6667 | 97 | 28 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | HG002compoundhet | hetalt | 85.0180 | 77.5969 | 94.0087 | 72.7861 | 8673 | 2504 | 4111 | 262 | 204 | 77.8626 | |
| gduggal-snapfb | INDEL | D6_15 | * | het | 85.3034 | 77.5966 | 94.7099 | 36.4009 | 8995 | 2597 | 14269 | 797 | 773 | 96.9887 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.5923 | 77.5927 | 88.2806 | 60.8637 | 1025 | 296 | 1032 | 137 | 136 | 99.2701 | |
| gduggal-snapplat | INDEL | D1_5 | HG002complexvar | het | 82.2897 | 77.5921 | 87.5928 | 61.7499 | 16112 | 4653 | 18878 | 2674 | 302 | 11.2939 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m1_e0 | het | 81.0028 | 77.5920 | 84.7273 | 95.7225 | 232 | 67 | 233 | 42 | 1 | 2.3810 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | * | 80.4978 | 77.5862 | 83.6364 | 94.2827 | 45 | 13 | 46 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 79.6213 | 77.5816 | 81.7711 | 43.7436 | 3163 | 914 | 3158 | 704 | 666 | 94.6023 | |
| gduggal-snapfb | INDEL | I1_5 | * | hetalt | 80.2098 | 77.5793 | 83.0249 | 77.6167 | 8685 | 2510 | 4128 | 844 | 445 | 52.7251 | |
| gduggal-snapvard | INDEL | * | * | homalt | 86.7363 | 77.5779 | 98.3465 | 41.7135 | 97105 | 28066 | 99624 | 1675 | 1571 | 93.7910 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.1496 | 77.5758 | 72.8707 | 49.6025 | 256 | 74 | 231 | 86 | 83 | 96.5116 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 65.9821 | 77.5633 | 57.4100 | 52.3175 | 13821 | 3998 | 35430 | 26284 | 22200 | 84.4620 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 84.7522 | 77.5610 | 93.4132 | 77.6139 | 159 | 46 | 156 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 84.7522 | 77.5610 | 93.4132 | 77.6139 | 159 | 46 | 156 | 11 | 11 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 87.3563 | 77.5510 | 100.0000 | 20.0000 | 38 | 11 | 40 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3933 | 77.5510 | 95.0000 | 75.6098 | 38 | 11 | 38 | 2 | 0 | 0.0000 | |