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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 818 819 820 821 822 823 824 825 826 ... 1720 1721 » 41051-41100 / 86044 show all
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	88.0242	78.7844	99.7191	26.2176	687	185	710	2	2	100.0000
mlin-fermikit	INDEL	D1_5	map_siren	*	85.3013	78.7759	93.0054	76.3252	2780	749	2779	209	185	88.5167
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	58.5210	78.7755	46.5517	55.0388	386	104	459	527	522	99.0512
raldana-dualsentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	82.1683	78.7720	85.8708	53.3827	1655	446	1568	258	253	98.0620
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	80.7110	78.7684	82.7519	62.8376	857	231	854	178	178	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	87.7870	78.7671	99.1398	19.4107	460	124	461	4	4	100.0000
gduggal-snapfb	INDEL	D1_5	HG002compoundhet	het	82.9422	78.7616	87.5915	48.3471	1361	367	6939	983	315	32.0448
qzeng-custom	INDEL	*	map_l100_m2_e0	homalt	85.5333	78.7470	93.5994	81.7141	993	268	1360	93	14	15.0538
qzeng-custom	SNP	ti	map_l100_m1_e0	*	87.5018	78.7403	98.4572	75.1333	37741	10190	37460	587	485	82.6235
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	58.8404	78.7365	46.9711	49.1951	511	138	504	569	529	92.9701
egarrison-hhga	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	80.4994	78.7352	82.3445	83.8017	7931	2142	8036	1723	1538	89.2629
ciseli-custom	SNP	*	HG002compoundhet	het	65.9081	78.7276	56.6789	49.8597	11162	3016	11240	8591	230	2.6772
ckim-isaac	INDEL	I6_15	segdup	homalt	88.0952	78.7234	100.0000	87.9870	37	10	37	0	0
ghariani-varprowl	INDEL	D6_15	map_l125_m0_e0	*	80.4348	78.7234	82.2222	94.5189	37	10	37	8	8	100.0000
qzeng-custom	INDEL	D6_15	map_l125_m0_e0	*	80.3712	78.7234	82.0896	94.0603	37	10	55	12	2	16.6667
gduggal-bwavard	INDEL	D6_15	map_l125_m0_e0	*	76.2887	78.7234	74.0000	94.1725	37	10	37	13	8	61.5385
gduggal-bwavard	INDEL	I16_PLUS	segdup	*	77.0833	78.7234	75.5102	94.6389	37	10	37	12	6	50.0000
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	43.2336	78.7185	29.8002	45.0072	344	93	343	808	773	95.6683
qzeng-custom	SNP	tv	map_l100_m2_e1	homalt	87.7555	78.7143	99.1432	62.9833	7322	1980	7290	63	62	98.4127
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	83.7918	78.7037	89.5833	87.3850	85	23	86	10	6	60.0000
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	64.2663	78.7037	54.3046	76.0317	85	23	82	69	42	60.8696
ltrigg-rtg1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	85.8712	78.6982	94.4828	72.7955	133	36	137	8	8	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	81.9321	78.6885	85.4545	77.6423	48	13	47	8	8	100.0000
gduggal-snapplat	INDEL	I1_5	map_l100_m2_e0	het	80.9130	78.6885	83.2669	93.4516	624	169	627	126	3	2.3810
gduggal-snapfb	INDEL	I6_15	map_l100_m2_e0	het	84.5604	78.6885	91.3793	74.1071	48	13	53	5	4	80.0000
gduggal-snapfb	INDEL	I6_15	map_l100_m2_e1	het	84.5604	78.6885	91.3793	74.8918	48	13	53	5	4	80.0000
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	84.9868	78.6885	92.3810	59.6154	96	26	97	8	3	37.5000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	88.0734	78.6885	100.0000	52.4752	48	13	48	0	0
ckim-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	88.0734	78.6885	100.0000	52.4752	48	13	48	0	0
bgallagher-sentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	88.0734	78.6885	100.0000	54.2857	48	13	48	0	0
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	87.1538	78.6792	97.6744	47.9419	417	113	420	10	9	90.0000
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	76.1074	78.6642	73.7116	78.2560	1696	460	1702	607	378	62.2735
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	84.5812	78.6612	91.4649	48.1133	3067	832	10502	980	908	92.6531
anovak-vg	INDEL	*	map_l150_m0_e0	homalt	74.0771	78.6585	70.0000	91.3793	129	35	133	57	53	92.9825
ckim-isaac	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	72.5970	78.6466	67.4115	73.7023	523	142	362	175	146	83.4286
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	42.6554	78.6458	29.2636	46.1940	151	41	151	365	351	96.1644
gduggal-snapplat	INDEL	I1_5	map_l100_m2_e1	het	80.9197	78.6420	83.3333	93.5255	637	173	640	128	3	2.3438
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	66.4735	78.6403	57.5670	62.2369	23968	6510	51344	37846	29268	77.3345
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	66.4735	78.6403	57.5670	62.2369	23968	6510	51344	37846	29268	77.3345
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	68.9415	78.6340	61.3762	40.0333	449	122	1106	696	623	89.5115
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	82.7904	78.6275	87.4187	53.2630	15617	4245	16259	2340	997	42.6068
qzeng-custom	SNP	tv	map_l100_m2_e0	homalt	87.6918	78.6086	99.1482	62.9624	7243	1971	7217	62	61	98.3871
qzeng-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	83.1523	78.6082	88.2540	57.7370	305	83	834	111	54	48.6486
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	82.5264	78.6070	86.8571	81.0401	158	43	152	23	4	17.3913
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	79.3931	78.6070	80.1951	58.1462	790	215	822	203	195	96.0591
gduggal-snapplat	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	80.6495	78.6024	82.8061	85.2794	3802	1035	3848	799	94	11.7647
ciseli-custom	SNP	*	map_l250_m2_e0	homalt	80.9434	78.5927	83.4390	87.8922	2111	575	2106	418	300	71.7703
eyeh-varpipe	INDEL	D6_15	map_siren	*	81.9080	78.5855	85.5238	80.3591	400	109	449	76	58	76.3158
gduggal-bwavard	INDEL	D6_15	map_l125_m2_e0	*	79.7632	78.5714	80.9917	92.2684	99	27	98	23	16	69.5652
gduggal-bwavard	INDEL	D6_15	map_l150_m2_e0	homalt	88.0000	78.5714	100.0000	86.2745	22	6	21	0	0

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