PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40451-40500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | * | decoy | * | 80.0000 | 80.0000 | 80.0000 | 99.9657 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | C1_5 | * | * | 78.1282 | 80.0000 | 76.3420 | 92.2396 | 8 | 2 | 1607 | 498 | 106 | 21.2851 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 86.4681 | 80.0000 | 94.0741 | 79.8206 | 124 | 31 | 127 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9788 | 8 | 2 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 69.2308 | 4 | 1 | 4 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.9850 | 8 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | homalt | 84.4720 | 80.0000 | 89.4737 | 80.7107 | 12 | 3 | 34 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.1060 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | homalt | 84.8138 | 80.0000 | 90.2439 | 81.3636 | 12 | 3 | 37 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 80.0000 | 100.0000 | 4 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.2529 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.7470 | 80.0000 | 94.7368 | 83.8983 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | het | 86.7470 | 80.0000 | 94.7368 | 84.6774 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | het | 86.7470 | 80.0000 | 94.7368 | 84.8000 | 16 | 4 | 18 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | * | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 94.7368 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 74.6479 | 44 | 11 | 18 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.9592 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 52.6316 | 8 | 2 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 84.2105 | 80.0000 | 88.8889 | 99.5929 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 95.2381 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 7.1429 | 12 | 3 | 13 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.8889 | 80.0000 | 100.0000 | 93.1429 | 12 | 3 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 88.1005 | 80.0000 | 98.0263 | 81.2243 | 428 | 107 | 1341 | 27 | 27 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 91.3580 | 4 | 1 | 4 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | * | 83.2000 | 80.0000 | 86.6667 | 91.0180 | 12 | 3 | 13 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | * | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 94.6809 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 65.9384 | 80.0000 | 56.0811 | 49.8305 | 108 | 27 | 83 | 65 | 61 | 93.8462 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 44.8276 | 16 | 4 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.0617 | 8 | 2 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 84.9618 | 80.0000 | 90.5797 | 79.6460 | 124 | 31 | 125 | 13 | 2 | 15.3846 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 88.8889 | 80.0000 | 100.0000 | 79.6610 | 12 | 3 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 94.2857 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.3305 | 80.0000 | 89.1566 | 86.2583 | 76 | 19 | 74 | 9 | 4 | 44.4444 | |
| egarrison-hhga | INDEL | I6_15 | map_l125_m0_e0 | * | 88.8889 | 80.0000 | 100.0000 | 94.3128 | 12 | 3 | 12 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 97.1014 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 97.1831 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.7143 | 80.0000 | 92.3077 | 93.4673 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 84.2105 | 80.0000 | 88.8889 | 97.0000 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.6852 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.7578 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9914 | 8 | 2 | 8 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9555 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.5841 | 32 | 8 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e0 | het | 88.8889 | 80.0000 | 100.0000 | 98.7421 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l250_m2_e1 | het | 88.8889 | 80.0000 | 100.0000 | 98.7952 | 4 | 1 | 4 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 60.0000 | 4 | 1 | 4 | 0 | 0 | ||