PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3951-4000 / 86044 show all | |||||||||||||||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 93.3333 | 1 | 0 | 2 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9347 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9426 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8374 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9296 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | func_cds | het | 99.5392 | 100.0000 | 99.0826 | 50.0000 | 214 | 0 | 216 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 38.4824 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3816 | 20 | 0 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4222 | 12 | 0 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5305 | 5 | 0 | 5 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4518 | 17 | 0 | 17 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4947 | 10 | 0 | 10 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6150 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8893 | 100.0000 | 99.7788 | 74.1369 | 1353 | 0 | 1353 | 3 | 1 | 33.3333 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 3 | 0 | 3 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9592 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8842 | 16 | 0 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9633 | 21 | 0 | 21 | 0 | 0 | ||
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 100.0000 | 99.8145 | 47.5553 | 2152 | 0 | 2152 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.2056 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.4167 | 11 | 0 | 11 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.0820 | 9 | 0 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0297 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5806 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6378 | 6 | 0 | 6 | 0 | 0 | ||
| astatham-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9974 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9960 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 33 | 0 | 33 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| astatham-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.0000 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9969 | 1 | 0 | 4 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9924 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 61.1111 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8571 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1818 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.6744 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1013 | 3 | 0 | 3 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1707 | 3 | 0 | 3 | 0 | 0 | ||