PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39851-39900 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I1_5 | map_l100_m2_e1 | homalt | 87.7237 | 81.8519 | 94.5032 | 88.3469 | 442 | 98 | 447 | 26 | 1 | 3.8462 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 83.4657 | 81.8519 | 85.1445 | 71.6183 | 4190 | 929 | 4184 | 730 | 709 | 97.1233 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | het | 85.3180 | 81.8471 | 89.0963 | 91.8164 | 1028 | 228 | 1193 | 146 | 28 | 19.1781 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 89.1342 | 81.8421 | 97.8528 | 62.7854 | 311 | 69 | 319 | 7 | 7 | 100.0000 | |
| anovak-vg | SNP | ti | map_l125_m1_e0 | homalt | 89.7681 | 81.8379 | 99.4000 | 64.4522 | 9039 | 2006 | 8946 | 54 | 49 | 90.7407 | |
| mlin-fermikit | SNP | ti | map_siren | homalt | 85.5625 | 81.8362 | 89.6443 | 44.4398 | 31029 | 6887 | 31025 | 3584 | 3486 | 97.2656 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.1147 | 81.8331 | 97.8188 | 86.9556 | 500 | 111 | 583 | 13 | 1 | 7.6923 | |
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | het | 88.8720 | 81.8288 | 97.2418 | 86.9822 | 15446 | 3430 | 15442 | 438 | 39 | 8.9041 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m0_e0 | * | 90.0000 | 81.8182 | 100.0000 | 86.5672 | 27 | 6 | 27 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5246 | 81.8182 | 96.4286 | 85.9296 | 27 | 6 | 27 | 1 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 56.2500 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 87.8378 | 9 | 2 | 9 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | het | 85.0662 | 81.8182 | 88.5827 | 93.2602 | 594 | 132 | 675 | 87 | 20 | 22.9885 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.9978 | 81.8182 | 82.1782 | 94.8258 | 90 | 20 | 83 | 18 | 6 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 60.3774 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | tech_badpromoters | het | 85.7143 | 81.8182 | 90.0000 | 48.2759 | 27 | 6 | 27 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.0899 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.3494 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 81.8182 | 81.8182 | 81.8182 | 97.3621 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 81.8182 | 81.8182 | 81.8182 | 96.7262 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.1354 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 81.8182 | 81.8182 | 81.8182 | 97.1429 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5764 | 81.8182 | 96.5517 | 93.4389 | 27 | 6 | 28 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | het | 70.3504 | 81.8182 | 61.7021 | 97.9322 | 27 | 6 | 29 | 18 | 8 | 44.4444 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | het | 78.2609 | 81.8182 | 75.0000 | 96.9620 | 9 | 2 | 9 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 90.0000 | 81.8182 | 100.0000 | 97.4286 | 36 | 8 | 36 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | * | 81.8182 | 81.8182 | 81.8182 | 85.3333 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 90.0000 | 81.8182 | 100.0000 | 99.2007 | 9 | 2 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.0000 | 81.8182 | 64.2857 | 67.4419 | 18 | 4 | 18 | 10 | 8 | 80.0000 | |
| ckim-isaac | INDEL | * | tech_badpromoters | homalt | 90.0000 | 81.8182 | 100.0000 | 50.9091 | 27 | 6 | 27 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 95.2128 | 9 | 2 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 96.7890 | 9 | 2 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | * | 81.8182 | 81.8182 | 81.8182 | 86.7470 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 81.8182 | 81.8182 | 81.8182 | 99.0886 | 9 | 2 | 9 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 81.8182 | 0.0000 | 0.0000 | 27 | 6 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_siren | het | 67.1265 | 81.8182 | 56.9079 | 78.8889 | 117 | 26 | 173 | 131 | 7 | 5.3435 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 85.7143 | 81.8182 | 90.0000 | 99.5646 | 9 | 2 | 9 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 67.8492 | 81.8182 | 57.9545 | 95.9781 | 54 | 12 | 51 | 37 | 7 | 18.9189 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 92.7152 | 36 | 8 | 22 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 93.3131 | 36 | 8 | 22 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.9127 | 81.8182 | 59.5238 | 95.2246 | 54 | 12 | 50 | 34 | 3 | 8.8235 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 97.4194 | 9 | 2 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 69.2308 | 27 | 6 | 12 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 47.4256 | 81.8182 | 33.3900 | 61.2010 | 1782 | 396 | 1769 | 3529 | 3376 | 95.6645 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.0000 | 81.8182 | 100.0000 | 85.5422 | 9 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.4040 | 81.8182 | 98.5401 | 90.7495 | 135 | 30 | 135 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 85.7143 | 81.8182 | 90.0000 | 97.7679 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 85.7143 | 81.8182 | 90.0000 | 97.9381 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 85.7143 | 81.8182 | 90.0000 | 97.9381 | 9 | 2 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5246 | 81.8182 | 96.4286 | 91.9540 | 27 | 6 | 27 | 1 | 1 | 100.0000 | |