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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 792 793 794 795 796 797 798 799 800 ... 1720 1721 » 39751-39800 / 86044 show all
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	90.2174	82.1782	100.0000	93.4543	83	18	83	0	0
ckim-isaac	SNP	ti	HG002compoundhet	*	88.7627	82.1776	96.4952	32.6037	14363	3115	14647	532	421	79.1353
ndellapenna-hhga	INDEL	I16_PLUS	HG002compoundhet	*	86.2940	82.1745	90.8483	50.5089	1761	382	1767	178	133	74.7191
ltrigg-rtg2	INDEL	I16_PLUS	HG002compoundhet	*	88.6244	82.1745	96.1730	41.5559	1761	382	1734	69	67	97.1014
gduggal-bwafb	INDEL	D6_15	map_l100_m1_e0	*	89.1165	82.1705	97.3451	85.2480	212	46	220	6	3	50.0000
ckim-gatk	SNP	ti	map_l125_m2_e1	het	89.1406	82.1659	97.4093	86.6958	15683	3404	15679	417	41	9.8321
ciseli-custom	SNP	tv	map_siren	het	84.4100	82.1595	86.7874	65.3031	23505	5104	23489	3576	93	2.6007
gduggal-snapvard	INDEL	I6_15	*	het	64.9859	82.1571	53.7516	42.4853	8242	1790	11591	9973	7974	79.9559
gduggal-bwaplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.4563	82.1519	98.1864	56.4502	1947	423	1949	36	33	91.6667
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	65.3542	82.1429	54.2636	73.2919	138	30	140	118	84	71.1864
eyeh-varpipe	INDEL	D6_15	map_l150_m2_e0	homalt	81.3415	82.1429	80.5556	91.1330	23	5	29	7	7	100.0000
egarrison-hhga	INDEL	D16_PLUS	map_l100_m0_e0	*	82.4496	82.1429	82.7586	90.9375	23	5	24	5	2	40.0000
cchapple-custom	INDEL	D16_PLUS	map_l100_m0_e0	*	77.9661	82.1429	74.1935	94.2056	23	5	23	8	1	12.5000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	88.3843	82.1429	95.6522	53.0612	23	5	22	1	1	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	map_l100_m0_e0	*	88.3843	82.1429	95.6522	87.8307	23	5	22	1	0	0.0000
ltrigg-rtg1	INDEL	D16_PLUS	map_l125_m2_e1	*	88.3843	82.1429	95.6522	90.7631	23	5	22	1	0	0.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	90.1961	82.1429	100.0000	54.1667	23	5	22	0	0
raldana-dualsentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1961	82.1429	100.0000	59.6491	69	15	69	0	0
mlin-fermikit	INDEL	D6_15	map_siren	het	83.2384	82.1429	84.3636	79.3233	230	50	232	43	33	76.7442
qzeng-custom	INDEL	D1_5	map_siren	hetalt	90.1961	82.1429	100.0000	94.0476	69	15	5	0	0
jlack-gatk	INDEL	D16_PLUS	map_l100_m0_e0	*	74.1935	82.1429	67.6471	96.4876	23	5	23	11	1	9.0909
gduggal-snapvard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	71.6762	82.1328	63.5814	72.1033	1756	382	2734	1566	1053	67.2414
gduggal-bwaplat	SNP	ti	HG002complexvar	hetalt	89.7041	82.1256	98.8235	43.1438	170	37	168	2	2	100.0000
ciseli-custom	INDEL	D1_5	map_siren	*	83.6317	82.1196	85.2005	84.5008	2898	631	2890	502	233	46.4143
anovak-vg	SNP	ti	map_l125_m2_e0	homalt	89.9353	82.1183	99.3971	67.3107	9327	2031	9233	56	51	91.0714
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	89.8927	82.1104	99.3046	32.2337	1354	295	1428	10	10	100.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	83.7170	82.1053	85.3933	87.5698	78	17	76	13	5	38.4615
asubramanian-gatk	INDEL	*	map_l150_m1_e0	het	86.9483	82.1053	92.3984	93.4997	702	153	705	58	6	10.3448
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	83.0581	82.1038	84.0349	57.1491	1725	376	1637	311	307	98.7138
jmaeng-gatk	SNP	*	map_l100_m2_e0	*	89.4136	82.0994	98.1585	79.7900	60724	13240	60713	1139	79	6.9359
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	67.4387	82.0937	57.2234	62.0538	1788	390	1624	1214	1194	98.3526
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	0.0000	82.0933	0.0000	0.0000	651	142	0	0	0
gduggal-bwaplat	INDEL	D16_PLUS	*	homalt	89.7870	82.0922	99.0734	63.7561	1389	303	1390	13	11	84.6154
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	86.1301	82.0915	90.5865	80.5712	1256	274	1251	130	79	60.7692
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	86.1301	82.0915	90.5865	80.5712	1256	274	1251	130	79	60.7692
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	89.9538	82.0896	99.4845	75.5359	385	84	386	2	2	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	HG002complexvar	hetalt	89.8660	82.0896	99.2701	60.2899	275	60	272	2	2	100.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	85.1694	82.0755	88.5057	59.1549	87	19	462	60	43	71.6667
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	57.3067	82.0755	44.0217	76.7383	87	19	81	103	93	90.2913
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	83.3295	82.0722	84.6259	49.0103	31107	6795	30957	5624	5549	98.6664
ckim-gatk	SNP	*	map_l100_m2_e0	*	89.4294	82.0710	98.2373	79.5869	60703	13261	60692	1089	86	7.8972
ckim-isaac	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	83.1246	82.0664	84.2105	65.4096	1112	243	896	168	107	63.6905
anovak-vg	INDEL	D1_5	map_l125_m0_e0	*	80.9550	82.0565	79.8828	90.2159	407	89	409	103	43	41.7476
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	82.8529	82.0562	83.6653	62.9041	1724	377	1680	328	287	87.5000
gduggal-snapplat	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	87.5770	82.0514	93.9006	76.3684	45646	9985	45754	2972	322	10.8345
gduggal-snapplat	SNP	tv	tech_badpromoters	homalt	90.1408	82.0513	100.0000	62.3529	32	7	32	0	0
jpowers-varprowl	INDEL	*	tech_badpromoters	het	74.4186	82.0513	68.0851	50.5263	32	7	32	15	15	100.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1408	82.0513	100.0000	61.4458	32	7	32	0	0
hfeng-pmm2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	90.1408	82.0513	100.0000	60.9756	32	7	32	0	0
qzeng-custom	INDEL	D6_15	map_l150_m1_e0	het	84.5815	82.0513	87.2727	95.2668	32	7	48	7	2	28.5714

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