PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 791 792 793 794 795 796 797 798 799 ... 1720 1721 » 39701-39750 / 86044 show all
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	69.3724	82.3394	59.9338	79.2083	359	77	362	242	234	96.6942
gduggal-bwaplat	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.1566	82.3347	99.6207	65.0618	797	171	788	3	3	100.0000
gduggal-bwaplat	SNP	*	map_siren	*	90.0933	82.3317	99.4705	71.0074	120392	25836	120427	641	167	26.0530
qzeng-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	73.2113	82.3308	65.9106	63.8478	1752	376	1947	1007	294	29.1956
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	87.6651	82.3219	93.7500	55.0802	312	67	315	21	21	100.0000
anovak-vg	SNP	ti	map_l250_m2_e1	*	75.8245	82.3089	70.2872	91.6096	4178	898	4161	1759	398	22.6265
ciseli-custom	INDEL	D6_15	map_siren	homalt	66.5025	82.3077	55.7895	83.1709	107	23	106	84	76	90.4762
ckim-isaac	INDEL	*	segdup	hetalt	89.9263	82.3077	99.0991	92.8479	107	23	110	1	1	100.0000
raldana-dualsentieon	INDEL	*	HG002compoundhet	het	83.9323	82.2912	85.6402	78.9688	3369	725	3137	526	520	98.8593
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	86.9385	82.2761	92.1610	61.6572	441	95	435	37	30	81.0811
anovak-vg	SNP	ti	map_l250_m2_e0	*	75.7617	82.2684	70.2088	91.5692	4120	888	4103	1741	394	22.6307
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	90.2681	82.2624	100.0000	94.4664	7643	1648	14	0	0
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	90.2681	82.2624	100.0000	94.4664	7643	1648	14	0	0
gduggal-snapplat	SNP	tv	map_l125_m0_e0	homalt	90.2668	82.2602	100.0000	75.6753	1827	394	1828	0	0
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	*	83.5594	82.2599	84.9006	82.0181	2184	471	2221	395	339	85.8228
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	82.9268	82.2581	83.6066	84.9383	51	11	51	10	2	20.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	*	89.8678	82.2581	99.0291	99.9257	102	22	102	1	0	0.0000
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	*	90.2655	82.2581	100.0000	99.9182	102	22	101	0	0
anovak-vg	SNP	ti	map_l125_m2_e1	homalt	90.0123	82.2569	99.3822	67.2869	9425	2033	9330	58	53	91.3793
anovak-vg	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	74.9889	82.2562	68.9015	82.7699	1451	313	1819	821	334	40.6821
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	90.0576	82.2478	99.5062	84.1820	3220	695	3224	16	14	87.5000
gduggal-snapvard	INDEL	*	func_cds	*	83.0794	82.2472	83.9286	43.6242	366	79	423	81	65	80.2469
anovak-vg	SNP	tv	map_l150_m0_e0	*	77.9452	82.2472	74.0709	86.1595	3433	741	3428	1200	357	29.7500
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	83.2354	82.2465	84.2483	57.4547	1728	373	1642	307	301	98.0456
jmaeng-gatk	SNP	*	map_l100_m2_e1	*	89.5016	82.2404	98.1693	79.7702	61464	13273	61453	1146	79	6.8935
gduggal-snapvard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	29.5626	82.2368	18.0203	88.7412	125	27	142	646	14	2.1672
ciseli-custom	INDEL	D1_5	map_l125_m1_e0	homalt	81.4736	82.2350	80.7263	86.0483	287	62	289	69	57	82.6087
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	89.7947	82.2323	98.8889	27.1255	361	78	356	4	4	100.0000
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	87.6652	82.2314	93.8679	58.9147	199	43	199	13	3	23.0769
mlin-fermikit	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	84.1619	82.2267	86.1905	45.3886	7777	1681	7783	1247	1228	98.4763
qzeng-custom	INDEL	D16_PLUS	map_l100_m2_e0	*	36.0728	82.2222	23.1047	89.1924	74	16	64	213	1	0.4695
gduggal-snapfb	INDEL	I6_15	segdup	hetalt	82.7740	82.2222	83.3333	86.0465	37	8	10	2	2	100.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	90.0617	82.2222	99.5536	68.6275	222	48	223	1	1	100.0000
gduggal-bwaplat	INDEL	I6_15	segdup	hetalt	89.1566	82.2222	97.3684	92.6070	37	8	37	1	1	100.0000
gduggal-bwafb	INDEL	I1_5	map_l100_m2_e1	hetalt	90.2439	82.2222	100.0000	93.0723	37	8	23	0	0
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	82.2326	82.2222	82.2430	78.7698	111	24	88	19	18	94.7368
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	75.1094	82.2222	69.1293	80.3287	592	128	786	351	146	41.5954
qzeng-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	86.2959	82.2171	90.8006	44.5699	3204	693	7531	763	673	88.2045
gduggal-bwavard	SNP	*	HG002compoundhet	*	84.7137	82.2128	87.3715	45.7405	21229	4593	20991	3034	2565	84.5419
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	88.5630	82.2103	95.9796	32.1478	5661	1225	1886	79	51	64.5570
ckim-gatk	SNP	*	map_l100_m2_e1	*	89.5170	82.2096	98.2503	79.5686	61441	13296	61430	1094	86	7.8611
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	87.4099	82.2078	93.3149	53.2942	3031	656	3043	218	199	91.2844
ciseli-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	80.2108	82.2072	78.3091	58.4509	1095	237	1130	313	202	64.5367
gduggal-bwaplat	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	89.7995	82.2060	98.9387	71.6625	45732	9899	45775	491	144	29.3279
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	85.3739	82.2047	88.7974	65.9324	2185	473	2156	272	162	59.5588
ciseli-custom	SNP	*	*	hetalt	87.9067	82.2044	94.4591	39.6977	716	155	716	42	19	45.2381
ciseli-custom	SNP	tv	*	hetalt	87.9067	82.2044	94.4591	39.6977	716	155	716	42	19	45.2381
gduggal-bwafb	INDEL	D6_15	map_l100_m2_e0	*	89.1561	82.1970	97.4026	85.7934	217	47	225	6	3	50.0000
cchapple-custom	INDEL	D16_PLUS	HG002complexvar	hetalt	0.0000	82.1862	0.0000	0.0000	203	44	0	0	0
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	76.9641	82.1855	72.3665	61.3081	1790	388	1477	564	505	89.5390

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge