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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 789 790 791 792 793 794 795 796 797 ... 1720 1721 » 39601-39650 / 86044 show all
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	89.7782	82.5984	98.3250	32.1288	4870	1026	4931	84	71	84.5238
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	89.7782	82.5984	98.3250	32.1288	4870	1026	4931	84	71	84.5238
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	66.2455	82.5976	55.2980	57.8918	973	205	1670	1350	1223	90.5926
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	86.6087	82.5871	91.0420	67.8424	498	105	498	49	34	69.3878
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	69.4883	82.5826	59.9782	80.9276	550	116	550	367	359	97.8202
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	69.4883	82.5826	59.9782	80.9276	550	116	550	367	359	97.8202
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	88.1961	82.5806	94.6309	78.0882	128	27	141	8	8	100.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	66.7149	82.5790	55.9638	44.4510	1332	281	5818	4578	4118	89.9519
qzeng-custom	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	83.1236	82.5688	83.6858	64.5989	360	76	1108	216	72	33.3333
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	77.3318	82.5652	72.7223	71.1326	13274	2803	12037	4515	1002	22.1927
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	77.3318	82.5652	72.7223	71.1326	13274	2803	12037	4515	1002	22.1927
ckim-isaac	INDEL	I1_5	*	hetalt	89.8867	82.5636	98.6351	45.1097	9243	1952	9178	127	112	88.1890
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	87.6160	82.5603	93.3313	53.0320	3044	643	3065	219	187	85.3881
hfeng-pmm2	INDEL	*	HG002compoundhet	het	86.3875	82.5598	90.5872	78.6150	3380	714	3147	327	317	96.9419
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	79.8661	82.5564	77.3455	75.6274	549	116	676	198	177	89.3939
rpoplin-dv42	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	85.9089	82.5503	89.5522	75.5027	123	26	120	14	12	85.7143
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	76.5556	82.5342	71.3846	62.2751	723	153	464	186	158	84.9462
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	89.0110	82.5328	96.5928	74.6983	567	120	567	20	17	85.0000
ciseli-custom	INDEL	*	*	*	83.5453	82.5314	84.5844	60.0787	284352	60186	284718	51890	36584	70.5030
ciseli-custom	INDEL	D1_5	map_l125_m2_e1	homalt	81.9169	82.5269	81.3158	86.8147	307	65	309	71	59	83.0986
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	82.2614	82.5180	82.0064	76.8116	2058	436	2060	452	11	2.4336
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	*	88.5843	82.5175	95.6140	92.1971	118	25	109	5	3	60.0000
gduggal-snapplat	SNP	ti	map_l150_m0_e0	homalt	90.3251	82.5063	99.7809	77.2958	2278	483	2277	5	5	100.0000
gduggal-snapvard	SNP	*	tech_badpromoters	homalt	90.4110	82.5000	100.0000	44.9153	66	14	65	0	0
gduggal-bwafb	INDEL	*	map_l125_m1_e0	hetalt	90.4110	82.5000	100.0000	95.1952	33	7	16	0	0
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	90.1203	82.4985	99.2938	30.7241	1334	283	1406	10	10	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	88.8708	82.4960	96.3134	28.0265	5632	1195	1672	64	39	60.9375
ndellapenna-hhga	INDEL	D6_15	*	*	86.5914	82.4889	91.1232	54.1208	21523	4569	21701	2114	1783	84.3425
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	84.4697	82.4873	86.5497	58.4519	975	207	1036	161	135	83.8509
hfeng-pmm1	INDEL	*	HG002compoundhet	het	86.5457	82.4866	91.0249	77.7276	3377	717	3144	310	291	93.8710
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	84.8205	82.4841	87.2932	70.6596	1036	220	1161	169	127	75.1479
ciseli-custom	SNP	*	HG002compoundhet	hetalt	90.1141	82.4826	99.3017	17.9840	711	151	711	5	2	40.0000
ciseli-custom	SNP	tv	HG002compoundhet	hetalt	90.1141	82.4826	99.3017	17.9840	711	151	711	5	2	40.0000
gduggal-snapplat	INDEL	D1_5	map_siren	het	85.7607	82.4769	89.3168	89.6940	1878	399	2157	258	42	16.2791
gduggal-snapplat	INDEL	D1_5	map_l125_m2_e1	het	85.2642	82.4675	88.2571	93.6289	635	135	714	95	20	21.0526
asubramanian-gatk	INDEL	*	map_l150_m2_e1	het	87.2472	82.4675	92.6150	93.8423	762	162	765	61	6	9.8361
anovak-vg	INDEL	D6_15	HG002complexvar	homalt	78.9062	82.4636	75.6430	56.5846	964	205	1000	322	233	72.3602
gduggal-snapplat	INDEL	D1_5	map_l125_m2_e0	het	85.2845	82.4607	88.3085	93.5494	630	134	710	94	20	21.2766
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	41.2281	82.4561	27.4854	98.2013	47	10	47	124	2	1.6129
cchapple-custom	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	83.3241	82.4561	84.2105	99.3544	47	10	48	9	1	11.1111
jmaeng-gatk	SNP	ti	map_siren	hetalt	88.6792	82.4561	95.9184	81.0078	47	10	47	2	2	100.0000
ckim-isaac	SNP	*	HG002compoundhet	homalt	90.1933	82.4430	99.5521	29.8507	8889	1893	8890	40	35	87.5000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	*	84.2444	82.4369	86.1329	57.6838	1732	369	1646	265	260	98.1132
ckim-gatk	SNP	ti	map_l100_m1_e0	*	89.7917	82.4352	98.5900	77.1488	39512	8419	39505	565	68	12.0354
gduggal-snapvard	INDEL	D1_5	func_cds	homalt	90.3704	82.4324	100.0000	25.8824	61	13	63	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	75.8784	82.4324	70.2899	72.7811	122	26	97	41	41	100.0000
gduggal-bwavard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.3704	82.4324	100.0000	73.8589	61	13	63	0	0
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	87.1765	82.4324	92.5000	74.6032	61	13	74	6	6	100.0000
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	88.8215	82.4299	96.2877	75.1298	441	94	415	16	14	87.5000
jmaeng-gatk	SNP	ti	map_l100_m1_e0	*	89.7569	82.4247	98.5209	77.3729	39507	8424	39500	593	63	10.6239

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