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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 787 788 789 790 791 792 793 794 795 ... 1720 1721 » 39501-39550 / 86044 show all
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	90.0602	82.8959	98.5801	34.3105	979	202	972	14	13	92.8571
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.3226	82.8947	99.2126	91.1560	126	26	126	1	0	0.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.0000	82.8947	98.4375	90.7581	126	26	126	2	0	0.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	hetalt	86.8622	82.8909	91.2332	40.8368	3154	651	1561	150	79	52.6667
ckim-gatk	SNP	ti	map_l100_m2_e1	*	90.0482	82.8877	98.5628	78.3843	41017	8468	41010	598	70	11.7057
jmaeng-gatk	SNP	ti	map_l100_m2_e1	*	90.0240	82.8837	98.5106	78.5961	41015	8470	41008	620	64	10.3226
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	89.1292	82.8571	96.4286	74.5455	29	6	27	1	1	100.0000
ltrigg-rtg2	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	89.1292	82.8571	96.4286	83.8150	29	6	27	1	0	0.0000
gduggal-bwaplat	INDEL	I6_15	segdup	*	90.0543	82.8571	98.6207	95.0257	145	30	143	2	2	100.0000
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	90.6250	82.8571	100.0000	80.8219	29	6	14	0	0
qzeng-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	83.7908	82.8571	84.7458	75.8197	29	6	50	9	3	33.3333
gduggal-snapvard	SNP	*	HG002compoundhet	homalt	89.8866	82.8510	98.2279	37.1566	8933	1849	7594	137	100	72.9927
gduggal-bwafb	INDEL	I16_PLUS	HG002complexvar	homalt	87.0748	82.8479	91.7563	38.8158	256	53	256	23	22	95.6522
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	90.2790	82.8456	99.1780	30.0661	9200	1905	2413	20	17	85.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	38.2525	82.8402	24.8677	55.3895	140	29	141	426	425	99.7653
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	87.6898	82.8388	93.1443	61.7926	13318	2759	13301	979	950	97.0378
mlin-fermikit	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	87.6898	82.8388	93.1443	61.7926	13318	2759	13301	979	950	97.0378
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	88.6180	82.8379	95.2651	48.0962	3205	664	2857	142	132	92.9577
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	85.8694	82.8315	89.1386	45.6102	18430	3820	18400	2242	2180	97.2346
qzeng-custom	INDEL	D6_15	map_siren	hetalt	0.0000	82.8283	0.0000	0.0000	82	17	0	0	0
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	87.5446	82.8245	92.8353	37.8851	3337	692	1516	117	56	47.8632
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	87.0329	82.8169	91.7012	56.1220	882	183	884	80	65	81.2500
ndellapenna-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	83.5727	82.8140	84.3455	36.4989	15121	3138	15194	2820	2630	93.2624
eyeh-varpipe	INDEL	D6_15	map_l100_m1_e0	homalt	75.3723	82.8125	69.1589	84.6705	53	11	74	33	30	90.9091
jpowers-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	85.4358	82.8084	88.2353	65.4739	631	131	630	84	79	94.0476
gduggal-snapplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	84.9187	82.8004	87.1483	74.4451	3211	667	3221	475	17	3.5790
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	62.0275	82.7982	49.5879	79.0744	361	75	361	367	274	74.6594
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	84.5240	82.7851	86.3375	67.9071	755	157	752	119	119	100.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	86.3078	82.7751	90.1554	73.0070	173	36	174	19	12	63.1579
egarrison-hhga	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	83.3079	82.7701	83.8526	37.1677	15113	3146	15179	2923	2748	94.0130
eyeh-varpipe	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	*	87.8092	82.7619	93.5122	40.8038	869	181	3416	237	233	98.3122
eyeh-varpipe	INDEL	D6_15	map_l150_m2_e1	homalt	81.9113	82.7586	81.0811	91.0412	24	5	30	7	7	100.0000
gduggal-snapvard	INDEL	D6_15	func_cds	het	79.1035	82.7586	75.7576	50.7463	24	5	25	8	7	87.5000
gduggal-snapvard	INDEL	D6_15	map_l125_m0_e0	het	77.8088	82.7586	73.4177	88.3136	24	5	58	21	11	52.3810
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	89.6330	82.7586	97.7528	84.0215	72	15	87	2	2	100.0000
anovak-vg	INDEL	D6_15	func_cds	het	81.3559	82.7586	80.0000	46.4286	24	5	24	6	5	83.3333
anovak-vg	INDEL	D6_15	map_l125_m0_e0	het	80.1909	82.7586	77.7778	92.4051	24	5	28	8	6	75.0000
raldana-dualsentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	88.3436	82.7586	94.7368	83.5498	72	15	72	4	2	50.0000
ckim-gatk	SNP	ti	map_l100_m2_e0	*	89.9645	82.7516	98.5549	78.4080	40516	8445	40509	594	70	11.7845
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	87.8316	82.7461	93.5831	40.4184	12095	2522	17909	1228	1155	94.0554
jmaeng-gatk	SNP	ti	map_l100_m2_e0	*	89.9408	82.7455	98.5068	78.6206	40513	8448	40506	614	64	10.4235
ckim-vqsr	SNP	*	map_siren	het	90.3081	82.7379	99.4031	73.7019	75284	15707	75273	452	26	5.7522
egarrison-hhga	INDEL	I16_PLUS	HG002compoundhet	*	86.9177	82.7345	91.5464	49.7800	1773	370	1776	164	118	71.9512
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	87.5573	82.7344	92.9773	75.9228	944	197	940	71	43	60.5634
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	84.8154	82.7107	87.0300	49.4577	9166	1916	9166	1366	1354	99.1215
ciseli-custom	SNP	*	map_l150_m0_e0	homalt	84.0715	82.7097	85.4790	75.1182	3382	707	3373	573	459	80.1047
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	83.3649	82.7068	84.0336	84.5855	110	23	100	19	10	52.6316
hfeng-pmm3	INDEL	*	HG002compoundhet	het	86.9738	82.7064	91.7055	77.8323	3386	708	3151	285	268	94.0351
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	89.1830	82.6962	96.7742	67.5635	411	86	420	14	13	92.8571
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	76.5009	82.6944	71.1705	83.8697	755	158	906	367	155	42.2343

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