PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39201-39250 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 98.2906 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 90.9091 | 83.3333 | 100.0000 | 97.6367 | 35 | 7 | 35 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 86.0465 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.5714 | 25 | 5 | 27 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.9577 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m1_e0 | het | 89.2857 | 83.3333 | 96.1538 | 91.8239 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e0 | het | 89.2857 | 83.3333 | 96.1538 | 92.5714 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l125_m2_e1 | het | 89.2857 | 83.3333 | 96.1538 | 92.6966 | 25 | 5 | 25 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.7402 | 25 | 5 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 90.9091 | 83.3333 | 100.0000 | 98.5163 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.6887 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m2_e1 | homalt | 90.9091 | 83.3333 | 100.0000 | 96.7742 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.6237 | 5 | 1 | 5 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9443 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.3118 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.8355 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 97.8992 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.5836 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2353 | 83.3333 | 93.7500 | 86.7769 | 30 | 6 | 30 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 91.0448 | 10 | 2 | 10 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | HG002compoundhet | homalt | 1.5501 | 83.3333 | 0.7823 | 29.2688 | 20 | 4 | 28 | 3551 | 3544 | 99.8029 | |
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 94.5652 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 88.3721 | 5 | 1 | 5 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 86.6142 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 88.3562 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 88.5906 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.3333 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l125_m1_e0 | het | 90.9091 | 83.3333 | 100.0000 | 89.7119 | 25 | 5 | 25 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m2_e0 | het | 90.9091 | 83.3333 | 100.0000 | 90.8088 | 25 | 5 | 25 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l125_m2_e1 | het | 90.9091 | 83.3333 | 100.0000 | 90.9747 | 25 | 5 | 25 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 95.2381 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.7241 | 25 | 5 | 27 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 91.9922 | 40 | 8 | 41 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 98.5542 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 64.2857 | 5 | 1 | 5 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9091 | 83.3333 | 100.0000 | 91.9355 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.6877 | 5 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 88.9831 | 83.3333 | 95.4545 | 88.0435 | 20 | 4 | 21 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 86.8613 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 89.0909 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 89.2857 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.8889 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 62.5000 | 83.3333 | 50.0000 | 97.4277 | 5 | 1 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 54.0541 | 83.3333 | 40.0000 | 98.5795 | 5 | 1 | 8 | 12 | 0 | 0.0000 | |