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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 777 778 779 780 781 782 783 784 785 ... 1720 1721 » 39001-39050 / 86044 show all
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	88.3912	83.6820	93.6620	67.7273	400	78	399	27	22	81.4815
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	88.5874	83.6820	94.1038	66.9782	400	78	399	25	22	88.0000
qzeng-custom	INDEL	D1_5	*	hetalt	89.9947	83.6798	97.3404	85.7251	8573	1672	183	5	5	100.0000
gduggal-snapfb	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	86.3158	83.6735	89.1304	77.9904	41	8	41	5	5	100.0000
qzeng-custom	INDEL	D1_5	HG002compoundhet	hetalt	91.1048	83.6629	100.0000	61.9355	8547	1669	177	0	0
eyeh-varpipe	INDEL	D6_15	HG002complexvar	homalt	74.1328	83.6612	66.5529	48.6865	978	191	975	490	482	98.3673
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	79.9814	83.6479	76.6228	91.4225	3545	693	3553	1084	49	4.5203
eyeh-varpipe	INDEL	I1_5	HG002compoundhet	het	74.0633	83.6471	66.4499	67.5390	711	139	511	258	225	87.2093
gduggal-bwaplat	SNP	ti	map_siren	*	90.8656	83.6301	99.4716	68.7099	83927	16428	83958	446	118	26.4574
qzeng-custom	INDEL	D1_5	map_l100_m1_e0	het	89.6970	83.6228	96.7227	89.7617	1011	198	1151	39	27	69.2308
gduggal-snapplat	SNP	*	map_l250_m1_e0	het	87.0994	83.6172	90.8842	94.6651	3976	779	3978	399	190	47.6190
gduggal-bwafb	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	89.0929	83.6170	95.3363	63.5012	1179	231	1942	95	38	40.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	65.7441	83.6158	54.1667	62.4609	148	29	195	165	113	68.4848
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	90.8516	83.6115	99.4643	62.4413	551	108	557	3	3	100.0000
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	90.8516	83.6115	99.4643	62.4413	551	108	557	3	3	100.0000
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	0.0000	83.6066	0.0000	0.0000	51	10	0	0	0
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.0714	83.6066	100.0000	54.4643	51	10	51	0	0
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	87.1050	83.6066	90.9091	64.1694	102	20	100	10	2	20.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.0714	83.6066	100.0000	54.0541	51	10	51	0	0
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	90.9027	83.6009	99.6021	25.4941	729	143	751	3	3	100.0000
ckim-gatk	SNP	*	map_siren	homalt	91.0516	83.5974	99.9653	55.1658	46109	9047	46100	16	14	87.5000
qzeng-custom	INDEL	D6_15	map_l125_m2_e1	*	83.8208	83.5938	84.0491	91.4391	107	21	137	26	6	23.0769
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	87.6722	83.5938	92.1690	57.0360	1498	294	1483	126	81	64.2857
gduggal-bwaplat	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	91.0595	83.5864	100.0000	65.1965	1156	227	1160	0	0
eyeh-varpipe	INDEL	D6_15	map_l100_m2_e1	homalt	74.3512	83.5821	66.9565	84.9279	56	11	77	38	35	92.1053
egarrison-hhga	INDEL	I16_PLUS	HG002complexvar	hetalt	89.9158	83.5821	97.2881	65.1300	280	55	287	8	5	62.5000
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	80.5755	83.5821	77.7778	62.2922	840	165	847	242	95	39.2562
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	90.5336	83.5805	98.7484	42.1852	789	155	789	10	9	90.0000
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	84.7537	83.5791	85.9619	55.6947	36219	7116	36061	5889	5747	97.5887
gduggal-snapvard	INDEL	D6_15	map_siren	het	75.8046	83.5714	69.3587	81.7036	234	46	292	129	84	65.1163
qzeng-custom	INDEL	D6_15	map_l150_m1_e0	*	85.9418	83.5616	88.4615	94.3723	61	12	69	9	3	33.3333
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	82.8480	83.5616	82.1464	73.3422	732	144	819	178	170	95.5056
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	65.2610	83.5526	53.5398	93.1390	127	25	121	105	14	13.3333
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.7527	83.5526	96.9466	91.3302	127	25	127	4	0	0.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	90.6103	83.5498	98.9744	59.1195	386	76	386	4	4	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.8046	83.5488	99.4406	88.0415	711	140	711	4	0	0.0000
anovak-vg	SNP	ti	tech_badpromoters	*	89.2841	83.5294	95.8904	38.1356	71	14	70	3	3	100.0000
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	90.6197	83.5052	99.0596	65.6620	324	64	316	3	3	100.0000
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	87.2063	83.5000	91.2568	61.1465	167	33	167	16	13	81.2500
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	86.9792	83.5000	90.7609	61.7464	167	33	167	17	13	76.4706
ckim-isaac	INDEL	D1_5	map_siren	het	90.2008	83.4870	98.0888	79.1671	1901	376	1899	37	14	37.8378
gduggal-snapfb	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	79.2799	83.4829	75.4797	66.1968	3255	644	3186	1035	247	23.8647
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	90.6486	83.4722	99.1749	87.8994	601	119	601	5	3	60.0000
gduggal-snapvard	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	90.9582	83.4711	99.9208	44.6727	808	160	10092	8	8	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	61.7012	83.4697	48.9383	56.4509	510	101	484	505	504	99.8020
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	90.6188	83.4586	99.1228	73.6111	111	22	113	1	0	0.0000
jpowers-varprowl	INDEL	D16_PLUS	HG002compoundhet	het	32.6811	83.4568	20.3190	35.8955	338	67	344	1349	1346	99.7776
ndellapenna-hhga	INDEL	D16_PLUS	HG002compoundhet	het	77.8675	83.4568	72.9798	46.7026	338	67	578	214	199	92.9907
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	hetalt	90.4993	83.4558	98.8412	37.5745	8742	1733	2900	34	26	76.4706
ckim-isaac	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	75.8613	83.4547	69.5344	53.8102	802	159	687	301	288	95.6811

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