PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38101-38150 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.0964 | 6 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0732 | 6 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.3799 | 6 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 92.3077 | 85.7143 | 100.0000 | 70.0935 | 30 | 5 | 32 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 88.8298 | 42 | 7 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.4959 | 30 | 5 | 23 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.4198 | 6 | 1 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.5943 | 18 | 3 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.3574 | 18 | 3 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 92.2581 | 12 | 2 | 12 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 35.7447 | 85.7143 | 22.5806 | 94.7487 | 24 | 4 | 21 | 72 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.7823 | 6 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 85.7143 | 100.0000 | 12 | 2 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 89.1473 | 24 | 4 | 24 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | het | 87.8049 | 85.7143 | 90.0000 | 37.5000 | 6 | 1 | 9 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 98.3146 | 6 | 1 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 57.1429 | 6 | 1 | 6 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8101 | 18 | 3 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.3768 | 18 | 3 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 85.7143 | 85.7143 | 85.7143 | 96.9298 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 96.0630 | 6 | 1 | 5 | 0 | 0 | ||
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 75.9259 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 49.0231 | 85.7143 | 34.3284 | 99.8804 | 18 | 3 | 23 | 44 | 2 | 4.5455 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | homalt | 90.0000 | 85.7143 | 94.7368 | 76.8293 | 18 | 3 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| ciseli-custom | SNP | tv | map_siren | * | 87.3579 | 85.7022 | 89.0790 | 62.2878 | 39363 | 6567 | 39315 | 4820 | 974 | 20.2075 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6701 | 85.6906 | 94.0373 | 58.9423 | 2066 | 345 | 2066 | 131 | 124 | 94.6565 | |
| ckim-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 92.1829 | 85.6895 | 99.7411 | 68.7184 | 1479 | 247 | 1541 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 65.7740 | 85.6857 | 53.3715 | 63.8640 | 26117 | 4363 | 26223 | 22910 | 22642 | 98.8302 | |
| asubramanian-gatk | INDEL | * | map_l150_m2_e1 | * | 90.1401 | 85.6845 | 95.0845 | 97.7994 | 1233 | 206 | 1238 | 64 | 7 | 10.9375 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0778 | 85.6776 | 99.5114 | 35.1466 | 2333 | 390 | 2444 | 12 | 12 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.2342 | 85.6776 | 99.8774 | 37.7987 | 2333 | 390 | 2444 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.6723 | 100.0000 | 5836 | 976 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.0184 | 85.6671 | 99.3870 | 87.2881 | 1297 | 217 | 1297 | 8 | 3 | 37.5000 | |
| anovak-vg | SNP | ti | map_l100_m2_e0 | homalt | 92.0181 | 85.6628 | 99.3921 | 60.4480 | 15684 | 2625 | 15532 | 95 | 90 | 94.7368 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | homalt | 87.0824 | 85.6618 | 88.5509 | 72.6120 | 6524 | 1092 | 6520 | 843 | 689 | 81.7319 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.4848 | 85.6601 | 98.1595 | 56.6489 | 1129 | 189 | 1120 | 21 | 21 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3781 | 85.6589 | 87.1094 | 66.0027 | 221 | 37 | 223 | 33 | 21 | 63.6364 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | homalt | 87.0667 | 85.6493 | 88.5319 | 72.6293 | 6589 | 1104 | 6585 | 853 | 699 | 81.9461 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 92.1781 | 85.6492 | 99.7845 | 35.1049 | 376 | 63 | 463 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 92.1775 | 85.6492 | 99.7831 | 34.9788 | 376 | 63 | 460 | 1 | 1 | 100.0000 | |