PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38001-38050 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4249 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7186 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 91.0156 | 30 | 5 | 23 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.1220 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.8333 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 91.0506 | 30 | 5 | 23 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 94.5455 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.2381 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.3702 | 12 | 2 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.0588 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4138 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 90.8000 | 30 | 5 | 23 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 94.7368 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.5556 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.8904 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 93.5065 | 30 | 5 | 30 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.5556 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 92.3077 | 85.7143 | 100.0000 | 25.0000 | 42 | 7 | 42 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.7500 | 12 | 2 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4895 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7612 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7347 | 85.7143 | 23.3766 | 97.5877 | 36 | 6 | 36 | 118 | 1 | 0.8475 | |
| jlack-gatk | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 90.2552 | 42 | 7 | 42 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.2078 | 6 | 1 | 6 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | * | 91.9971 | 85.7143 | 99.2739 | 88.1471 | 6 | 1 | 957 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | het | 91.8033 | 85.7143 | 98.8235 | 86.8787 | 6 | 1 | 420 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 85.7143 | 85.7143 | 85.7143 | 91.3580 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 85.7143 | 85.7143 | 85.7143 | 86.2745 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.6522 | 12 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 85.7143 | 100.0000 | 99.0500 | 36 | 6 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 90.5702 | 42 | 7 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.9932 | 85.7143 | 99.2647 | 63.0435 | 144 | 24 | 135 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.8741 | 30 | 5 | 30 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.5665 | 18 | 3 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.1207 | 18 | 3 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C1_5 | HG002complexvar | * | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| jmaeng-gatk | INDEL | C1_5 | HG002complexvar | het | 0.0000 | 85.7143 | 0.0000 | 0.0000 | 6 | 1 | 0 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.7198 | 12 | 2 | 11 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.3706 | 85.7143 | 97.8261 | 63.1016 | 144 | 24 | 135 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 61.2903 | 12 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.7742 | 18 | 3 | 19 | 0 | 0 | ||