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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 747 748 749 750 751 752 753 754 755 ... 1720 1721 » 37501-37550 / 86044 show all
hfeng-pmm1	INDEL	I1_5	map_l250_m0_e0	het	92.8571	86.6667	100.0000	98.2527	13	2	13	0	0
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	92.8571	86.6667	100.0000	96.2428	13	2	13	0	0
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	92.8571	86.6667	100.0000	96.7005	13	2	13	0	0
hfeng-pmm2	INDEL	I1_5	map_l250_m0_e0	het	92.8571	86.6667	100.0000	98.5426	13	2	13	0	0
jlack-gatk	INDEL	I16_PLUS	map_l125_m1_e0	*	89.6552	86.6667	92.8571	97.3231	13	2	13	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l125_m2_e0	*	89.6552	86.6667	92.8571	97.5986	13	2	13	1	0	0.0000
jlack-gatk	INDEL	I16_PLUS	map_l125_m2_e1	*	89.6552	86.6667	92.8571	97.5986	13	2	13	1	0	0.0000
jlack-gatk	INDEL	I1_5	map_l250_m0_e0	het	78.7879	86.6667	72.2222	98.9018	13	2	13	5	0	0.0000
jlack-gatk	INDEL	I6_15	map_l125_m1_e0	het	83.8710	86.6667	81.2500	93.6759	26	4	26	6	0	0.0000
jlack-gatk	INDEL	I6_15	map_l125_m2_e0	het	83.8710	86.6667	81.2500	94.3860	26	4	26	6	0	0.0000
jlack-gatk	INDEL	I6_15	map_l125_m2_e1	het	83.8710	86.6667	81.2500	94.5299	26	4	26	6	0	0.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e0	hetalt	92.8571	86.6667	100.0000	95.6229	13	2	13	0	0
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e1	hetalt	92.8571	86.6667	100.0000	95.7377	13	2	13	0	0
jlack-gatk	INDEL	D16_PLUS	map_l100_m1_e0	homalt	78.7879	86.6667	72.2222	94.9861	13	2	13	5	2	40.0000
jlack-gatk	INDEL	D16_PLUS	map_l100_m2_e0	*	83.8710	86.6667	81.2500	95.3033	78	12	78	18	6	33.3333
jlack-gatk	INDEL	D1_5	map_l125_m2_e0	hetalt	92.8571	86.6667	100.0000	96.0606	13	2	13	0	0
jlack-gatk	INDEL	D1_5	map_l125_m2_e1	hetalt	92.8571	86.6667	100.0000	96.1194	13	2	13	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	92.8571	86.6667	100.0000	84.7059	13	2	13	0	0
jli-custom	INDEL	I16_PLUS	map_l125_m1_e0	*	89.6552	86.6667	92.8571	95.3642	13	2	13	1	0	0.0000
jli-custom	INDEL	I16_PLUS	map_l125_m2_e0	*	86.6667	86.6667	86.6667	95.5752	13	2	13	2	0	0.0000
jli-custom	INDEL	I16_PLUS	map_l125_m2_e1	*	86.6667	86.6667	86.6667	95.5752	13	2	13	2	0	0.0000
jli-custom	INDEL	I1_5	map_l250_m0_e0	het	92.8571	86.6667	100.0000	98.0994	13	2	13	0	0
ckim-isaac	INDEL	I6_15	func_cds	homalt	92.8571	86.6667	100.0000	31.5789	13	2	13	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	92.8571	86.6667	100.0000	89.5161	13	2	13	0	0
ckim-vqsr	INDEL	I1_5	map_l250_m0_e0	het	81.2500	86.6667	76.4706	98.9875	13	2	13	4	0	0.0000
ckim-vqsr	INDEL	I6_15	map_l125_m0_e0	*	92.8571	86.6667	100.0000	96.5333	13	2	13	0	0
egarrison-hhga	SNP	ti	map_l150_m1_e0	hetalt	92.8571	86.6667	100.0000	80.3030	13	2	13	0	0
egarrison-hhga	SNP	ti	map_l150_m2_e0	hetalt	92.8571	86.6667	100.0000	83.5443	13	2	13	0	0
egarrison-hhga	SNP	ti	map_l150_m2_e1	hetalt	92.8571	86.6667	100.0000	83.9506	13	2	13	0	0
egarrison-hhga	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	81.2500	86.6667	76.4706	96.2637	13	2	13	4	4	100.0000
egarrison-hhga	INDEL	D1_5	map_l125_m2_e0	hetalt	92.8571	86.6667	100.0000	95.4545	13	2	13	0	0
egarrison-hhga	INDEL	D1_5	map_l125_m2_e1	hetalt	92.8571	86.6667	100.0000	95.6376	13	2	13	0	0
egarrison-hhga	INDEL	I1_5	map_l250_m0_e0	het	86.6667	86.6667	86.6667	98.2639	13	2	13	2	0	0.0000
dgrover-gatk	INDEL	I6_15	map_l150_m1_e0	het	89.6552	86.6667	92.8571	95.5128	13	2	13	1	1	100.0000
dgrover-gatk	INDEL	I6_15	map_l150_m2_e0	het	89.6552	86.6667	92.8571	95.9064	13	2	13	1	1	100.0000
asubramanian-gatk	INDEL	*	map_l125_m1_e0	*	91.1206	86.6635	96.0609	96.9394	1826	281	1829	75	8	10.6667
astatham-gatk	SNP	*	map_l100_m0_e0	*	92.7245	86.6569	99.7057	72.7426	28459	4382	28455	84	35	41.6667
asubramanian-gatk	INDEL	*	map_l125_m2_e1	*	91.1601	86.6517	96.1634	97.1389	1928	297	1930	77	8	10.3896
ckim-gatk	SNP	tv	map_l100_m1_e0	het	91.3400	86.6511	96.5654	83.3110	13359	2058	13355	475	16	3.3684
asubramanian-gatk	INDEL	D1_5	map_l125_m2_e0	het	89.8280	86.6492	93.2489	90.9553	662	102	663	48	4	8.3333
ltrigg-rtg1	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0802	86.6397	93.8053	58.5321	214	33	212	14	14	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0287	86.6397	93.6937	56.8932	214	33	208	14	14	100.0000
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	57.3256	86.6375	42.8337	90.6835	791	122	783	1045	45	4.3062
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.6115	86.6324	99.4771	37.4276	2359	364	2473	13	12	92.3077
anovak-vg	SNP	ti	map_l250_m2_e1	het	72.2384	86.6323	61.9461	92.2704	2858	441	2852	1752	393	22.4315
gduggal-snapvard	INDEL	D1_5	segdup	homalt	90.9566	86.6295	95.7386	91.9173	311	48	337	15	15	100.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	90.5530	86.6267	94.8521	57.6727	868	134	866	47	35	74.4681
astatham-gatk	SNP	tv	map_l250_m2_e1	*	92.4090	86.6255	99.0200	90.7000	2526	390	2526	25	7	28.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	92.2495	86.6245	98.6558	36.0651	2053	317	2055	28	21	75.0000
gduggal-snapvard	INDEL	*	map_l125_m0_e0	homalt	92.1348	86.6197	98.4000	84.7437	246	38	369	6	4	66.6667

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