PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37151-37200 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.9493 | 87.1795 | 99.5370 | 80.2016 | 442 | 65 | 430 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | homalt | 93.1507 | 87.1795 | 100.0000 | 46.6667 | 34 | 5 | 32 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | * | 89.4737 | 87.1795 | 91.8919 | 97.7384 | 68 | 10 | 68 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | het | 93.1507 | 87.1795 | 100.0000 | 41.5385 | 34 | 5 | 38 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | het | 90.0217 | 87.1795 | 93.0556 | 91.7526 | 68 | 10 | 67 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | het | 72.9591 | 87.1795 | 62.7273 | 93.3775 | 68 | 10 | 69 | 41 | 36 | 87.8049 | |
| gduggal-bwavard | INDEL | * | * | * | 87.3464 | 87.1769 | 87.5166 | 58.1126 | 300361 | 44181 | 299341 | 42698 | 38856 | 91.0019 | |
| astatham-gatk | SNP | ti | map_l250_m2_e1 | * | 92.8549 | 87.1749 | 99.3266 | 90.8364 | 4425 | 651 | 4425 | 30 | 12 | 40.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 89.5692 | 87.1711 | 92.1030 | 51.3163 | 3214 | 473 | 3219 | 276 | 266 | 96.3768 | |
| anovak-vg | SNP | * | map_l125_m2_e0 | * | 81.2942 | 87.1691 | 76.1613 | 76.0893 | 40728 | 5995 | 40268 | 12604 | 2812 | 22.3104 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.5093 | 87.1670 | 98.5493 | 64.5442 | 1963 | 289 | 1970 | 29 | 7 | 24.1379 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.0414 | 87.1669 | 90.9983 | 69.2267 | 2126 | 313 | 2133 | 211 | 14 | 6.6351 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | het | 91.5298 | 87.1628 | 96.3575 | 84.5264 | 13892 | 2046 | 13888 | 525 | 14 | 2.6667 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.7360 | 87.1622 | 94.6154 | 66.3212 | 129 | 19 | 123 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 54.8494 | 87.1622 | 40.0150 | 81.6424 | 2064 | 304 | 2128 | 3190 | 200 | 6.2696 | |
| anovak-vg | SNP | ti | map_l125_m0_e0 | het | 76.2921 | 87.1596 | 67.8342 | 82.4188 | 7202 | 1061 | 7166 | 3398 | 912 | 26.8393 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1378 | 87.1570 | 100.0000 | 32.6259 | 1588 | 234 | 1619 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.9241 | 87.1570 | 99.5086 | 30.3082 | 1588 | 234 | 1620 | 8 | 8 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 93.0151 | 87.1476 | 99.7297 | 45.3148 | 1824 | 269 | 1845 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.7319 | 87.1393 | 88.3326 | 67.8909 | 31886 | 4706 | 32320 | 4269 | 3693 | 86.5074 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.3371 | 87.1377 | 83.6094 | 85.7161 | 962 | 142 | 959 | 188 | 129 | 68.6170 | |
| jlack-gatk | INDEL | I16_PLUS | * | hetalt | 92.9357 | 87.1306 | 99.5697 | 57.5280 | 1828 | 270 | 1851 | 8 | 7 | 87.5000 | |
| jli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 92.7483 | 87.1212 | 99.1525 | 87.2294 | 115 | 17 | 117 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 90.8247 | 87.1204 | 94.8579 | 42.0846 | 2381 | 352 | 2103 | 114 | 109 | 95.6140 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.0250 | 87.1204 | 88.9485 | 79.8268 | 832 | 123 | 829 | 103 | 98 | 95.1456 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 92.6853 | 87.1155 | 99.0159 | 25.1484 | 7052 | 1043 | 7244 | 72 | 68 | 94.4444 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 87.1090 | 0.0000 | 0.0000 | 2061 | 305 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.9017 | 87.1048 | 95.0448 | 58.1886 | 1405 | 208 | 2014 | 105 | 83 | 79.0476 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 91.7145 | 87.1038 | 96.8405 | 38.5031 | 5167 | 765 | 5180 | 169 | 126 | 74.5562 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.7395 | 87.1028 | 99.1561 | 70.9914 | 466 | 69 | 470 | 4 | 3 | 75.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8310 | 87.1028 | 99.3658 | 71.0526 | 466 | 69 | 470 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.6423 | 87.1021 | 73.3594 | 90.7618 | 2627 | 389 | 2627 | 954 | 23 | 2.4109 | |
| astatham-gatk | SNP | ti | map_l250_m2_e0 | * | 92.8085 | 87.1006 | 99.3169 | 90.7841 | 4362 | 646 | 4362 | 30 | 12 | 40.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.6347 | 27 | 4 | 29 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.7381 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.5301 | 27 | 4 | 29 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 63.6275 | 87.0968 | 50.1217 | 72.1733 | 54 | 8 | 206 | 205 | 170 | 82.9268 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.5760 | 87.0968 | 68.3230 | 91.5441 | 108 | 16 | 110 | 51 | 5 | 9.8039 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 78.3058 | 87.0968 | 71.1268 | 92.7366 | 108 | 16 | 101 | 41 | 7 | 17.0732 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.9412 | 27 | 4 | 29 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 82.2086 | 27 | 4 | 29 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 92.7075 | 87.0968 | 99.0909 | 87.3418 | 108 | 16 | 109 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 93.1034 | 87.0968 | 100.0000 | 87.1915 | 108 | 16 | 109 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | hetalt | 93.1034 | 87.0968 | 100.0000 | 81.6456 | 27 | 4 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | homalt | 18.3051 | 87.0968 | 10.2273 | 63.1285 | 27 | 4 | 27 | 237 | 215 | 90.7173 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e1 | hetalt | 91.5254 | 87.0968 | 96.4286 | 78.6260 | 27 | 4 | 27 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 91.7011 | 87.0959 | 96.8206 | 45.2421 | 9672 | 1433 | 2223 | 73 | 72 | 98.6301 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.5120 | 87.0957 | 98.6467 | 70.2422 | 5386 | 798 | 5394 | 74 | 11 | 14.8649 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.3175 | 87.0886 | 87.5476 | 72.9553 | 1376 | 204 | 1378 | 196 | 10 | 5.1020 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 74.4014 | 87.0872 | 64.9416 | 71.9724 | 5591 | 829 | 6613 | 3570 | 542 | 15.1821 | |