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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 712 713 714 715 716 717 718 719 720 ... 1720 1721 » 35751-35800 / 86044 show all
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	85.2750	89.1170	81.7505	62.2628	434	53	439	98	30	30.6122
asubramanian-gatk	INDEL	*	map_l125_m0_e0	*	91.5650	89.1156	94.1527	97.5656	786	96	789	49	3	6.1225
ltrigg-rtg1	INDEL	D1_5	map_l150_m0_e0	het	93.9975	89.1089	99.4536	79.7790	180	22	182	1	0	0.0000
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	93.7853	89.1089	98.9796	92.5362	90	11	97	1	1	100.0000
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	92.7835	89.1089	96.7742	93.3045	90	11	90	3	3	100.0000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	89.9308	89.1078	90.7692	60.4401	769	94	767	78	76	97.4359
gduggal-snapfb	INDEL	*	map_l250_m2_e1	het	90.1679	89.0995	91.2621	94.7636	188	23	188	18	3	16.6667
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.1124	89.0961	99.7271	37.2432	621	76	731	2	2	100.0000
gduggal-snapfb	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	73.1196	89.0957	62.0019	58.7223	670	82	669	410	358	87.3171
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	80.0548	89.0909	72.6829	91.6052	147	18	149	56	9	16.0714
mlin-fermikit	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	73.8152	89.0909	63.0112	55.9378	343	42	339	199	180	90.4523
ndellapenna-hhga	INDEL	D6_15	map_l100_m2_e1	*	90.1374	89.0909	91.2088	85.8549	245	30	249	24	12	50.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.6233	89.0909	94.3038	89.1185	147	18	149	9	0	0.0000
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	55.0794	89.0909	39.8618	59.0952	343	42	346	522	495	94.8276
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.2308	89.0909	100.0000	89.1403	98	12	96	0	0
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	93.3511	89.0909	98.0392	62.2222	49	6	50	1	1	100.0000
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	93.5311	89.0796	98.4509	45.0331	571	70	572	9	8	88.8889
qzeng-custom	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	87.7736	89.0780	86.5068	60.4550	1256	154	2526	394	302	76.6497
ciseli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	53.4223	89.0717	38.1524	44.9605	2111	259	2098	3401	3202	94.1488
rpoplin-dv42	INDEL	*	map_siren	hetalt	93.4218	89.0688	98.2222	87.9936	220	27	221	4	1	25.0000
asubramanian-gatk	INDEL	D6_15	map_l100_m1_e0	homalt	94.2149	89.0625	100.0000	87.5546	57	7	57	0	0
ndellapenna-hhga	INDEL	I1_5	HG002compoundhet	het	88.3547	89.0588	87.6616	81.8124	757	93	746	105	65	61.9048
egarrison-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	85.8513	89.0547	82.8704	80.0000	179	22	179	37	34	91.8919
ckim-vqsr	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.9827	89.0533	99.4898	29.9773	2107	259	2145	11	11	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.9827	89.0533	99.4898	29.9773	2107	259	2145	11	11	100.0000
gduggal-snapfb	INDEL	*	map_l250_m2_e0	het	90.1205	89.0476	91.2195	94.6489	187	23	187	18	3	16.6667
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	73.3911	89.0476	62.4169	74.6344	561	69	563	339	45	13.2743
ciseli-custom	SNP	ti	map_siren	*	90.7989	89.0429	92.6255	57.4504	89359	10996	89077	7092	2003	28.2431
raldana-dualsentieon	INDEL	D6_15	map_l100_m2_e1	hetalt	94.2029	89.0411	100.0000	68.7500	65	8	65	0	0
ghariani-varprowl	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	89.3062	89.0402	89.5738	76.8026	1373	169	1366	159	137	86.1635
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	93.9322	89.0399	99.3933	86.4223	983	121	983	6	4	66.6667
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	93.4337	89.0390	98.2847	83.6374	593	73	573	10	2	20.0000
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	93.4337	89.0390	98.2847	83.6374	593	73	573	10	2	20.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.9379	89.0339	99.4135	76.1872	341	42	339	2	2	100.0000
qzeng-custom	INDEL	D1_5	map_siren	*	93.2868	89.0337	97.9666	83.5685	3142	387	3228	67	43	64.1791
raldana-dualsentieon	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.8325	89.0303	94.8168	50.9778	3498	431	3494	191	186	97.3822
gduggal-snapplat	SNP	*	map_l125_m1_e0	homalt	94.1655	89.0269	99.9336	67.4179	15050	1855	15040	10	9	90.0000
anovak-vg	SNP	*	map_l100_m0_e0	het	78.3081	89.0262	69.8934	77.2580	18878	2327	18693	8052	2114	26.2543
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	93.5393	89.0244	98.5366	84.9486	219	27	202	3	1	33.3333
dgrover-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.9517	89.0231	99.4582	32.2317	1622	200	1652	9	8	88.8889
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.9967	89.0226	97.3422	75.0725	592	73	586	16	11	68.7500
egarrison-hhga	INDEL	D6_15	HG002compoundhet	het	59.7254	89.0187	44.9378	47.8055	762	94	1336	1637	1603	97.9230
astatham-gatk	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	93.9775	89.0167	99.5238	40.0705	3404	420	3553	17	17	100.0000
jlack-gatk	INDEL	I6_15	HG002compoundhet	*	90.8429	89.0155	92.7469	37.7522	7812	964	7813	611	606	99.1817
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	71.1558	89.0067	59.2690	47.6573	7473	923	18665	12827	11064	86.2556
gduggal-snapplat	SNP	tv	map_l150_m1_e0	*	91.7958	89.0029	94.7697	85.0160	9712	1200	9712	536	286	53.3582
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.5628	88.9960	98.6237	42.7471	3138	388	3153	44	40	90.9091
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.5628	88.9960	98.6237	42.7471	3138	388	3153	44	40	90.9091
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.9195	88.9930	99.4234	30.1878	1520	188	1552	9	8	88.8889
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.1021	88.9925	97.6096	61.2654	477	59	490	12	11	91.6667

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