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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 711 712 713 714 715 716 717 718 719 ... 1720 1721 » 35701-35750 / 86044 show all
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	89.4545	89.1929	89.7177	61.8267	27186	3294	25967	2976	2168	72.8495
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	89.4545	89.1929	89.7177	61.8267	27186	3294	25967	2976	2168	72.8495
gduggal-bwavard	INDEL	D1_5	func_cds	homalt	94.2857	89.1892	100.0000	22.3529	66	8	66	0	0
gduggal-bwavard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	70.2185	89.1892	57.9025	52.1104	1188	144	1176	855	827	96.7251
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	92.9577	89.1892	97.0588	77.0270	33	4	33	1	1	100.0000
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	92.9577	89.1892	97.0588	75.8865	33	4	33	1	1	100.0000
ckim-isaac	INDEL	D16_PLUS	segdup	het	86.4020	89.1892	83.7838	91.6290	33	4	31	6	3	50.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	92.9577	89.1892	97.0588	68.8073	33	4	33	1	1	100.0000
jpowers-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	76.5568	89.1892	67.0588	70.9331	396	48	399	196	192	97.9592
asubramanian-gatk	INDEL	D6_15	map_l125_m2_e1	homalt	94.2857	89.1892	100.0000	90.2077	33	4	33	0	0
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	92.3815	89.1767	95.8253	57.6036	3477	422	3489	152	75	49.3421
ltrigg-rtg1	SNP	*	map_l250_m0_e0	het	94.1134	89.1766	99.6288	83.4358	1343	163	1342	5	0	0.0000
raldana-dualsentieon	INDEL	I16_PLUS	HG002compoundhet	*	92.4081	89.1741	95.8856	50.9476	1911	232	1911	82	81	98.7805
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	91.2907	89.1727	93.5118	37.7146	18366	2230	19068	1323	1081	81.7082
gduggal-snapplat	SNP	*	tech_badpromoters	*	91.8033	89.1720	94.5946	70.5179	140	17	140	8	0	0.0000
raldana-dualsentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.8992	89.1688	99.1597	88.4671	708	86	708	6	5	83.3333
anovak-vg	SNP	*	map_siren	homalt	93.9262	89.1653	99.2241	49.9600	49180	5976	48469	379	316	83.3773
mlin-fermikit	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	83.9484	89.1626	79.3103	79.1581	543	66	483	126	115	91.2698
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	94.2693	89.1599	100.0000	66.4495	329	40	309	0	0
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	92.2149	89.1589	95.4879	47.4893	33793	4109	39553	1869	1772	94.8101
rpoplin-dv42	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	91.2087	89.1575	93.3565	53.3541	3503	426	3499	249	235	94.3775
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.0410	89.1557	99.4928	31.2609	1151	140	1177	6	5	83.3333
gduggal-bwavard	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	48.6441	89.1553	33.4464	63.7189	781	95	789	1570	1544	98.3439
raldana-dualsentieon	INDEL	I16_PLUS	HG002compoundhet	hetalt	94.2662	89.1543	100.0000	44.8215	1866	227	1886	0	0
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	93.9867	89.1496	99.3789	58.6118	304	37	320	2	1	50.0000
ghariani-varprowl	INDEL	D1_5	*	*	89.8931	89.1478	90.6510	61.1738	130819	15925	130678	13477	11237	83.3791
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	94.0695	89.1473	99.5671	45.7746	230	28	230	1	1	100.0000
rpoplin-dv42	INDEL	D6_15	HG002complexvar	hetalt	92.5754	89.1412	96.2848	45.0369	903	110	933	36	35	97.2222
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.2037	89.1403	93.3649	89.3380	197	24	197	14	9	64.2857
ghariani-varprowl	INDEL	D16_PLUS	HG002compoundhet	het	34.2987	89.1358	21.2349	37.1418	361	44	368	1365	1360	99.6337
raldana-dualsentieon	INDEL	I16_PLUS	*	hetalt	94.2306	89.1325	99.9472	55.4588	1870	228	1892	1	1	100.0000
qzeng-custom	INDEL	D16_PLUS	map_l100_m1_e0	het	38.9095	89.1304	24.8869	85.7327	41	5	55	166	1	0.6024
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	92.1348	89.1304	95.3488	63.5593	41	5	41	2	2	100.0000
gduggal-snapvard	INDEL	I1_5	map_l250_m2_e1	homalt	92.7457	89.1304	96.6667	92.9742	41	5	58	2	1	50.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	93.1818	89.1304	97.6190	65.2893	41	5	41	1	1	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	map_l100_m1_e0	het	91.9717	89.1304	95.0000	84.6743	41	5	38	2	1	50.0000
jpowers-varprowl	INDEL	D1_5	map_l250_m0_e0	*	90.1099	89.1304	91.1111	97.6923	41	5	41	4	2	50.0000
ltrigg-rtg1	INDEL	D1_5	map_l250_m0_e0	*	94.2529	89.1304	100.0000	95.2596	41	5	42	0	0
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	92.1348	89.1304	95.3488	68.1481	41	5	41	2	2	100.0000
jpowers-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	83.4460	89.1304	78.4431	93.1585	246	30	262	72	4	5.5556
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	92.1348	89.1304	95.3488	65.6000	41	5	41	2	2	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	92.1348	89.1304	95.3488	63.8655	41	5	41	2	2	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	93.1818	89.1304	97.6190	64.1026	41	5	41	1	1	100.0000
anovak-vg	INDEL	I1_5	map_l250_m2_e1	homalt	69.2187	89.1304	56.5789	95.1592	41	5	43	33	30	90.9091
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	92.1348	89.1304	95.3488	68.6131	41	5	41	2	2	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	88.8877	89.1304	88.6463	58.2878	205	25	203	26	26	100.0000
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	85.8503	89.1304	82.8031	86.0652	984	120	963	200	61	30.5000
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.8760	89.1186	99.1699	39.2139	3448	421	9677	81	70	86.4198
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.0694	89.1185	97.3869	71.5714	1941	237	1938	52	24	46.1538
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	73.1549	89.1170	62.0422	57.0748	434	53	559	342	258	75.4386

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