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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 708 709 710 711 712 713 714 715 716 ... 1720 1721 » 35551-35600 / 86044 show all
jli-custom	INDEL	D16_PLUS	map_l100_m0_e0	het	91.7369	89.4737	94.1176	95.4667	17	2	16	1	0	0.0000
jpowers-varprowl	SNP	tv	HG002compoundhet	het	92.4509	89.4714	95.6356	62.4569	4181	492	4273	195	18	9.2308
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.8847	89.4650	98.7637	56.1710	2157	254	2157	27	25	92.5926
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	het	85.6204	89.4628	82.0945	59.1015	866	102	2728	595	253	42.5210
mlin-fermikit	INDEL	D6_15	HG002complexvar	*	90.8139	89.4568	92.2128	58.0463	4743	559	4784	404	381	94.3069
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	93.7450	89.4498	98.4735	43.0447	3154	372	3161	49	44	89.7959
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	93.8528	89.4478	98.7142	36.5693	2365	279	2380	31	29	93.5484
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	87.6321	89.4447	85.8915	75.4124	1627	192	1869	307	263	85.6678
ndellapenna-hhga	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	87.6321	89.4447	85.8915	75.4124	1627	192	1869	307	263	85.6678
ciseli-custom	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	57.8173	89.4447	42.7138	55.6700	3254	384	3236	4340	4025	92.7419
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	92.8623	89.4444	96.5517	85.0649	644	76	644	23	10	43.4783
gduggal-snapfb	INDEL	*	map_l150_m0_e0	het	90.4453	89.4428	91.4706	88.9359	305	36	311	29	6	20.6897
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.8486	89.4412	98.7128	45.6849	2465	291	2454	32	30	93.7500
mlin-fermikit	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	84.2223	89.4397	79.5802	65.5942	415	49	417	107	106	99.0654
gduggal-bwafb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	92.3938	89.4378	95.5519	45.2869	12329	1456	13383	623	612	98.2343
raldana-dualsentieon	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.2917	89.4359	99.7050	39.9291	872	103	1014	3	3	100.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.2919	89.4359	99.7056	40.6868	872	103	1016	3	3	100.0000
ciseli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	86.2310	89.4309	83.2523	73.2130	1210	143	1198	241	178	73.8589
gduggal-snapplat	SNP	tv	map_l150_m2_e1	*	92.0738	89.4279	94.8810	86.0143	10286	1216	10287	555	293	52.7928
anovak-vg	SNP	tv	map_l100_m2_e0	*	83.6288	89.4260	78.5375	71.8835	22386	2647	22351	6108	1319	21.5946
jpowers-varprowl	INDEL	*	map_l250_m2_e0	*	91.3580	89.4260	93.3754	96.4605	296	35	296	21	12	57.1429
ghariani-varprowl	INDEL	D1_5	*	homalt	93.4710	89.4248	97.9006	50.1151	43752	5174	43695	937	631	67.3426
jpowers-varprowl	INDEL	D1_5	*	homalt	93.6510	89.4228	98.2990	49.9719	43751	5175	43688	756	634	83.8624
ckim-isaac	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.3567	89.4171	99.8741	46.5320	1580	187	1586	2	1	50.0000
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	82.4109	89.4163	76.4235	49.0835	3278	388	3248	1002	864	86.2275
jlack-gatk	INDEL	*	HG002compoundhet	hetalt	94.2807	89.4162	99.7049	50.9823	22515	2665	22637	67	62	92.5373
hfeng-pmm3	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.1566	89.4121	97.2284	51.4923	3513	416	3508	100	94	94.0000
gduggal-bwaplat	SNP	ti	tech_badpromoters	*	93.8272	89.4118	98.7013	57.6923	76	9	76	1	0	0.0000
hfeng-pmm1	SNP	tv	HG002compoundhet	het	94.3861	89.4072	99.9521	52.4903	4178	495	4176	2	2	100.0000
jlack-gatk	INDEL	*	*	hetalt	94.2358	89.4005	99.6240	58.0561	22562	2675	22786	86	78	90.6977
mlin-fermikit	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	80.6298	89.3985	73.4276	74.6915	1189	141	1039	376	353	93.8830
ndellapenna-hhga	INDEL	D6_15	map_l100_m2_e0	*	90.3148	89.3939	91.2548	85.9433	236	28	240	23	11	47.8261
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	87.8527	89.3939	86.3636	84.4706	59	7	57	9	4	44.4444
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	93.6508	89.3939	98.3333	77.6536	118	14	118	2	1	50.0000
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e0	het	92.9378	89.3939	96.7742	93.0023	59	7	60	2	0	0.0000
ltrigg-rtg2	INDEL	I1_5	map_l250_m2_e1	het	92.9378	89.3939	96.7742	93.3405	59	7	60	2	0	0.0000
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e0	het	89.3939	89.3939	89.3939	97.2454	59	7	59	7	3	42.8571
jpowers-varprowl	INDEL	I1_5	map_l250_m2_e1	het	89.3939	89.3939	89.3939	97.3419	59	7	59	7	3	42.8571
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	45.3799	89.3939	30.4082	52.3346	295	35	298	682	674	98.8270
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	94.4000	89.3939	100.0000	85.7855	59	7	57	0	0
cchapple-custom	INDEL	I1_5	map_l250_m2_e0	het	91.4729	89.3939	93.6508	96.7102	59	7	59	4	0	0.0000
cchapple-custom	INDEL	I1_5	map_l250_m2_e1	het	91.4729	89.3939	93.6508	96.8117	59	7	59	4	0	0.0000
ckim-dragen	INDEL	*	map_l100_m2_e1	hetalt	94.4000	89.3939	100.0000	86.3481	118	14	120	0	0
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353
gduggal-snapvard	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	71.3469	89.3925	59.3632	66.7339	5739	681	11355	7773	6089	78.3353
gduggal-bwavard	INDEL	D1_5	*	*	90.6910	89.3918	92.0286	58.1851	131178	15567	129649	11230	9891	88.0766
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.7813	89.3878	94.3066	53.8721	657	78	646	39	38	97.4359
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	91.7813	89.3878	94.3066	53.8098	657	78	646	39	38	97.4359
anovak-vg	INDEL	D1_5	map_siren	homalt	92.1020	89.3836	94.9909	79.6667	1044	124	1043	55	46	83.6364

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