PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 706 707 708 709 710 711 712 713 714 ... 1720 1721 » 35451-35500 / 86044 show all
anovak-vg	INDEL	I1_5	map_l150_m0_e0	homalt	68.1120	89.5522	54.9550	90.0627	60	7	61	50	47	94.0000
asubramanian-gatk	INDEL	D6_15	map_l100_m2_e1	homalt	94.4882	89.5522	100.0000	87.8543	60	7	60	0	0
gduggal-bwafb	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	*	93.1275	89.5499	97.0028	61.5094	5133	599	3463	107	92	85.9813
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2746	89.5387	99.5395	27.7522	7318	855	7349	34	30	88.2353
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.0868	89.5385	99.1220	39.9179	873	102	1016	9	9	100.0000
jpowers-varprowl	INDEL	*	map_l100_m2_e1	*	91.1487	89.5367	92.8197	85.5685	3363	393	3361	260	208	80.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.4785	89.5349	100.0000	77.9841	77	9	83	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.4785	89.5349	100.0000	78.2152	77	9	83	0	0
ndellapenna-hhga	INDEL	D6_15	map_l100_m1_e0	*	90.3034	89.5349	91.0853	85.3075	231	27	235	23	11	47.8261
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.0313	89.5336	99.0048	44.4125	2438	285	2487	25	25	100.0000
ckim-isaac	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	92.5151	89.5327	95.7031	72.8238	479	56	490	22	20	90.9091
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.2768	89.5307	99.5544	31.1699	12323	1441	12511	56	50	89.2857
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.0531	89.5265	99.0617	37.9884	624	73	739	7	7	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.3523	89.5265	99.7279	38.0270	624	73	733	2	2	100.0000
egarrison-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	93.9099	89.5234	98.7484	34.7140	2273	266	2288	29	28	96.5517
gduggal-snapfb	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	90.6005	89.5230	91.7043	43.8461	16346	1913	17079	1545	1043	67.5081
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	71.3875	89.5226	59.3622	63.3723	1444	169	1452	994	947	95.2716
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	93.0522	89.5197	96.8750	80.6207	615	72	744	24	20	83.3333
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	93.2878	89.5161	97.3913	86.9615	111	13	112	3	1	33.3333
ckim-dragen	INDEL	*	map_l100_m1_e0	hetalt	94.4681	89.5161	100.0000	85.7143	111	13	112	0	0
hfeng-pmm3	SNP	tv	HG002compoundhet	het	94.3711	89.5142	99.7852	53.0848	4183	490	4181	9	2	22.2222
gduggal-bwavard	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	88.5500	89.5115	87.6089	73.2264	3243	380	3217	455	346	76.0440
astatham-gatk	INDEL	I6_15	map_siren	het	93.7729	89.5105	98.4615	87.4396	128	15	128	2	1	50.0000
rpoplin-dv42	INDEL	I6_15	map_siren	het	92.4188	89.5105	95.5224	83.4568	128	15	128	6	6	100.0000
ltrigg-rtg1	SNP	ti	map_l250_m0_e0	het	94.3034	89.5075	99.6424	84.4255	836	98	836	3	0	0.0000
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	93.9895	89.5064	98.9454	55.5533	2158	253	2158	23	21	91.3043
asubramanian-gatk	INDEL	D1_5	map_l100_m1_e0	*	92.8980	89.5022	96.5618	87.1490	1654	194	1657	59	7	11.8644
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	88.8337	89.5000	88.1773	74.9692	179	21	179	24	8	33.3333
gduggal-bwafb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	91.5601	89.5000	93.7173	65.2095	179	21	179	12	12	100.0000
gduggal-bwavard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	83.2462	89.4980	77.8108	88.9364	1355	159	1308	373	121	32.4397
ckim-isaac	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	94.0526	89.4976	99.0961	23.7208	6110	717	6249	57	54	94.7368
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.2610	89.4954	99.5627	34.0219	12558	1474	12751	56	50	89.2857
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	71.7070	89.4928	59.8187	91.4779	247	29	198	133	8	6.0150
jpowers-varprowl	INDEL	*	map_l250_m2_e1	*	91.4110	89.4895	93.4169	96.5296	298	35	298	21	12	57.1429
gduggal-bwafb	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	92.4658	89.4891	95.6473	67.6067	1524	179	1692	77	41	53.2468
astatham-gatk	SNP	ti	map_l250_m0_e0	*	93.8385	89.4891	98.6323	93.8175	1226	144	1226	17	3	17.6471
gduggal-bwafb	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	92.5216	89.4845	95.7722	64.1176	3489	410	3330	147	104	70.7483
ckim-isaac	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	92.8582	89.4839	96.4970	68.0383	3242	381	3223	117	42	35.8974
gduggal-bwaplat	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	94.3828	89.4773	99.8574	56.4904	9107	1071	9104	13	13	100.0000
gduggal-bwaplat	INDEL	*	segdup	*	94.1537	89.4757	99.3478	96.2604	2287	269	2285	15	9	60.0000
anovak-vg	SNP	tv	map_l100_m2_e1	*	83.6965	89.4751	78.6189	71.8943	22622	2661	22577	6140	1324	21.5635
astatham-gatk	INDEL	D16_PLUS	map_l100_m0_e0	het	84.4720	89.4737	80.0000	97.0545	17	2	16	4	0	0.0000
bgallagher-sentieon	INDEL	D16_PLUS	HG002complexvar	hetalt	93.0557	89.4737	96.9365	48.0682	221	26	443	14	14	100.0000
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	92.7273	89.4737	96.2264	99.5017	51	6	51	2	0	0.0000
asubramanian-gatk	INDEL	D6_15	map_l100_m0_e0	hetalt	94.4444	89.4737	100.0000	83.6364	17	2	18	0	0
asubramanian-gatk	INDEL	D6_15	map_l125_m1_e0	hetalt	94.4444	89.4737	100.0000	86.1789	17	2	17	0	0
asubramanian-gatk	INDEL	D6_15	map_l125_m2_e0	hetalt	94.4444	89.4737	100.0000	87.6812	17	2	17	0	0
gduggal-snapfb	INDEL	D1_5	tech_badpromoters	*	91.8919	89.4737	94.4444	57.1429	17	2	17	1	1	100.0000
gduggal-bwafb	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	71.8310	89.4737	60.0000	70.5882	17	2	3	2	2	100.0000
gduggal-bwafb	INDEL	D6_15	map_l125_m1_e0	hetalt	94.4444	89.4737	100.0000	90.6250	17	2	3	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge