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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 702 703 704 705 706 707 708 709 710 ... 1720 1721 » 35251-35300 / 86044 show all
ciseli-custom	INDEL	I1_5	func_cds	homalt	91.8455	89.9160	93.8596	19.1489	107	12	107	7	6	85.7143
jpowers-varprowl	INDEL	*	HG002complexvar	*	91.1605	89.9127	92.4435	54.5762	69177	7761	68949	5636	5349	94.9077
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	91.8686	89.9090	93.9155	56.7894	1185	133	1312	85	81	95.2941
ltrigg-rtg2	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.2269	89.9059	98.9842	47.2854	3438	386	3508	36	35	97.2222
gduggal-snapplat	SNP	*	map_l150_m1_e0	*	92.5221	89.9049	95.2961	83.9996	27519	3090	27532	1359	751	55.2612
hfeng-pmm2	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.8776	89.9023	98.2206	65.9944	1656	186	1656	30	21	70.0000
egarrison-hhga	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	77.5015	89.8990	68.1090	63.2249	1958	220	2125	995	950	95.4774
ltrigg-rtg1	INDEL	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.8485	89.8938	98.1671	64.6330	9055	1018	9105	170	90	52.9412
ciseli-custom	INDEL	D16_PLUS	*	homalt	66.9047	89.8936	53.2793	59.6184	1521	171	1511	1325	1241	93.6604
egarrison-hhga	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	94.0960	89.8927	98.7117	42.9671	1592	179	1609	21	20	95.2381
gduggal-snapplat	SNP	*	map_l125_m0_e0	het	91.0262	89.8926	92.1888	87.3834	11384	1280	11389	965	535	55.4404
anovak-vg	SNP	ti	map_l125_m2_e0	het	77.5170	89.8919	68.1370	78.1191	16968	1908	16853	7881	1719	21.8120
qzeng-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	90.0572	89.8904	90.2247	50.1569	38954	4381	59902	6490	4175	64.3297
anovak-vg	SNP	ti	map_l125_m1_e0	het	77.2287	89.8883	67.6948	76.8145	16419	1847	16307	7782	1697	21.8067
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	93.2945	89.8876	96.9697	75.5193	160	18	160	5	3	60.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	93.8416	89.8876	98.1595	71.7504	160	18	160	3	2	66.6667
ciseli-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	86.1694	89.8876	82.7465	54.2673	240	27	235	49	41	83.6735
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	92.7536	89.8876	95.8084	77.0289	160	18	160	7	5	71.4286
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	94.2123	89.8860	98.9760	27.5881	4888	550	5123	53	48	90.5660
ciseli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	72.3119	89.8851	60.4863	71.9881	391	44	398	260	35	13.4615
ckim-gatk	INDEL	D16_PLUS	HG002complexvar	hetalt	93.2896	89.8785	96.9697	47.4403	222	25	448	14	14	100.0000
ndellapenna-hhga	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	90.6589	89.8785	91.4530	77.6930	222	25	214	20	12	60.0000
ltrigg-rtg1	INDEL	*	map_siren	hetalt	94.0758	89.8785	98.6842	91.0728	222	25	225	3	3	100.0000
ltrigg-rtg1	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.4296	89.8785	97.2727	73.4300	222	25	214	6	1	16.6667
hfeng-pmm3	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	94.1804	89.8785	98.9147	72.1262	666	75	638	7	5	71.4286
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.3952	89.8785	99.3897	87.2026	2442	275	2443	15	3	20.0000
ckim-vqsr	INDEL	D16_PLUS	HG002complexvar	hetalt	93.2896	89.8785	96.9697	47.4403	222	25	448	14	14	100.0000
raldana-dualsentieon	INDEL	D16_PLUS	HG002compoundhet	het	81.9000	89.8765	75.2239	57.3791	364	41	252	83	82	98.7952
gduggal-bwafb	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	94.0050	89.8734	98.5348	73.8506	284	32	269	4	4	100.0000
gduggal-bwavard	INDEL	*	segdup	*	89.7413	89.8670	89.6160	95.3552	2297	259	2287	265	217	81.8868
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	71.2447	89.8649	59.0164	73.8944	133	15	108	75	75	100.0000
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	94.3325	89.8592	99.2746	57.8234	957	108	958	7	4	57.1429
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	54.2839	89.8551	38.8889	90.3514	62	7	63	99	24	24.2424
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	72.7179	89.8551	61.0706	92.0580	248	28	251	160	12	7.5000
ghariani-varprowl	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	61.4567	89.8526	46.6986	86.2385	1585	179	1655	1889	13	0.6882
qzeng-custom	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	88.6540	89.8499	87.4895	45.7726	8498	960	9343	1336	702	52.5449
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	*	93.1299	89.8491	96.6594	59.1348	4346	491	4456	154	72	46.7532
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	94.0239	89.8477	98.6072	53.8165	1062	120	1062	15	14	93.3333
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	94.5197	89.8462	99.7062	40.7085	876	99	1018	3	3	100.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	48.4627	89.8402	33.1807	64.3673	787	89	797	1605	1594	99.3146
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	het	93.7221	89.8362	97.9593	52.4760	9979	1129	12193	254	153	60.2362
jmaeng-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	93.8164	89.8325	98.1699	67.2797	751	85	751	14	12	85.7143
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	83.4646	89.8305	77.9412	76.1404	53	6	53	15	14	93.3333
ndellapenna-hhga	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	80.3030	89.8305	72.6027	74.2049	53	6	53	20	19	95.0000
raldana-dualsentieon	INDEL	I6_15	map_l100_m1_e0	het	93.8053	89.8305	98.1481	82.8025	53	6	53	1	0	0.0000
ciseli-custom	INDEL	I1_5	func_cds	het	78.5185	89.8305	69.7368	38.2114	53	6	53	23	13	56.5217
cchapple-custom	INDEL	I6_15	map_l100_m1_e0	het	90.8495	89.8305	91.8919	87.8289	53	6	68	6	1	16.6667
hfeng-pmm3	INDEL	I6_15	map_l100_m1_e0	het	93.8053	89.8305	98.1481	85.4839	53	6	53	1	1	100.0000
gduggal-snapvard	INDEL	I6_15	map_l100_m1_e0	het	70.0428	89.8305	57.3991	79.1978	53	6	128	95	77	81.0526
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.2666	89.8204	96.9880	69.6527	150	17	161	5	5	100.0000

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