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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 693 694 695 696 697 698 699 700 701 ... 1720 1721 » 34801-34850 / 86044 show all
jpowers-varprowl	INDEL	*	map_siren	*	91.5569	90.4453	92.6961	81.8403	6702	708	6701	528	440	83.3333
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1514	90.4452	98.1743	66.8941	1666	176	1667	31	27	87.0968
gduggal-snapfb	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	90.1510	90.4439	89.8599	72.3577	3199	338	3208	362	144	39.7790
raldana-dualsentieon	INDEL	I1_5	HG002complexvar	hetalt	94.9524	90.4403	99.9382	69.6987	1561	165	1618	1	1	100.0000
anovak-vg	SNP	ti	map_l100_m2_e1	het	80.9356	90.4328	73.2435	73.3025	27998	2962	27782	10149	2220	21.8741
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.6821	90.4306	99.3530	87.4575	2457	260	2457	16	11	68.7500
qzeng-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	89.1712	90.4306	87.9464	73.4911	189	20	197	27	10	37.0370
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.2643	90.4306	98.4375	74.6367	189	20	189	3	3	100.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	94.2933	90.4234	98.5092	63.1853	17704	1875	17841	270	18	6.6667
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.2933	90.4234	98.5092	63.1853	17704	1875	17841	270	18	6.6667
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	92.0055	90.4209	93.6466	50.9768	2492	264	2491	169	156	92.3077
gduggal-snapvard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	73.0196	90.4177	61.2365	38.8818	6039	640	15303	9687	8838	91.2357
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	94.1491	90.4125	98.2078	67.8829	13174	1397	13261	242	122	50.4132
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	94.1491	90.4125	98.2078	67.8829	13174	1397	13261	242	122	50.4132
hfeng-pmm1	INDEL	D6_15	map_l100_m2_e1	hetalt	94.9640	90.4110	100.0000	74.9049	66	7	66	0	0
jmaeng-gatk	INDEL	D6_15	map_l100_m2_e1	hetalt	94.9640	90.4110	100.0000	75.3731	66	7	66	0	0
ckim-dragen	INDEL	D6_15	map_l100_m2_e1	hetalt	94.9640	90.4110	100.0000	70.9251	66	7	66	0	0
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_51to200	het	76.2608	90.4082	65.9420	80.5543	443	47	273	141	138	97.8723
anovak-vg	SNP	ti	map_l100_m2_e0	het	80.8461	90.4056	73.1149	73.2980	27684	2938	27470	10101	2208	21.8592
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	91.0894	90.4040	91.7852	74.4242	1969	209	1743	156	147	94.2308
gduggal-bwaplat	SNP	*	HG002compoundhet	*	88.4972	90.4035	86.6696	48.3543	23344	2478	23445	3606	414	11.4809
gduggal-snapplat	SNP	ti	map_l150_m1_e0	*	92.9132	90.4018	95.5681	83.3799	17820	1892	17833	827	469	56.7110
hfeng-pmm1	INDEL	*	map_l100_m2_e0	hetalt	94.9580	90.4000	100.0000	87.9958	113	12	115	0	0
gduggal-bwafb	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	89.7973	90.4000	89.2026	69.9879	2712	288	2875	348	312	89.6552
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	hetalt	94.9580	90.4000	100.0000	36.3128	113	12	114	0	0
jlack-gatk	INDEL	D6_15	*	hetalt	94.6900	90.3964	99.4119	33.6937	7389	785	7438	44	37	84.0909
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	94.9357	90.3933	99.9588	34.5998	2390	254	2426	1	1	100.0000
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	79.3723	90.3851	70.7516	51.9765	3497	372	3464	1432	1427	99.6508
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	94.9495	90.3846	100.0000	57.8947	47	5	48	0	0
jlack-gatk	INDEL	I1_5	HG002compoundhet	hetalt	94.9037	90.3820	99.9017	57.2515	10102	1075	10162	10	9	90.0000
gduggal-snapfb	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	92.5726	90.3810	94.8730	43.3628	1945	207	1943	105	74	70.4762
jlack-gatk	INDEL	I1_5	*	hetalt	94.8892	90.3796	99.8725	62.8887	10118	1077	10180	13	12	92.3077
ghariani-varprowl	INDEL	*	segdup	*	89.4068	90.3756	88.4586	97.2748	2310	246	2307	301	223	74.0864
hfeng-pmm1	INDEL	D16_PLUS	HG002compoundhet	het	84.9405	90.3704	80.1262	57.0461	366	39	254	63	59	93.6508
eyeh-varpipe	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	67.7648	90.3704	54.2056	47.4847	244	26	232	196	196	100.0000
asubramanian-gatk	INDEL	D6_15	map_l100_m2_e1	het	92.0981	90.3704	93.8931	91.8176	122	13	123	8	2	25.0000
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	61.1681	90.3704	46.2295	44.2413	122	13	141	164	161	98.1707
gduggal-bwafb	INDEL	I6_15	segdup	het	94.1316	90.3614	98.2301	88.6089	75	8	111	2	2	100.0000
mlin-fermikit	INDEL	I16_PLUS	*	het	86.1646	90.3606	82.3411	68.6094	2456	262	2448	525	508	96.7619
anovak-vg	SNP	ti	map_l100_m1_e0	het	80.6718	90.3580	72.8613	71.8309	27055	2887	26845	9999	2187	21.8722
gduggal-bwafb	INDEL	D6_15	map_siren	het	93.8000	90.3571	97.5155	79.0228	253	27	314	8	1	12.5000
qzeng-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	92.5203	90.3553	94.7917	56.5611	178	19	182	10	10	100.0000
anovak-vg	SNP	ti	map_siren	*	88.3716	90.3532	86.4749	58.5181	90674	9681	89812	14047	3559	25.3364
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	94.5501	90.3525	99.1566	32.4379	1461	156	1646	14	14	100.0000
asubramanian-gatk	INDEL	D1_5	map_l150_m1_e0	homalt	94.4954	90.3509	99.0385	88.6957	206	22	206	2	1	50.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.6243	90.3481	99.3255	49.4027	571	61	589	4	4	100.0000
raldana-dualsentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	94.8996	90.3444	99.9384	37.7684	1600	171	1622	1	1	100.0000
gduggal-snapfb	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	83.4557	90.3376	77.5481	56.6986	2141	229	2138	619	618	99.8384
jpowers-varprowl	INDEL	*	func_cds	*	91.7808	90.3371	93.2715	40.6336	402	43	402	29	28	96.5517
ckim-dragen	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1429	90.3366	98.2840	67.1270	1664	178	1661	29	28	96.5517

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