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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 692 693 694 695 696 697 698 699 700 ... 1720 1721 » 34751-34800 / 86044 show all
asubramanian-gatk	INDEL	D1_5	map_l150_m2_e0	homalt	94.6004	90.4959	99.0950	89.2457	219	23	219	2	1	50.0000
ltrigg-rtg1	INDEL	*	map_l250_m1_e0	*	94.3636	90.4918	98.5816	93.0781	276	29	278	4	1	25.0000
ckim-isaac	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	93.5449	90.4908	96.8125	75.4534	3835	403	3918	129	10	7.7519
gduggal-snapplat	SNP	ti	map_l125_m0_e0	het	91.6658	90.4877	92.8749	86.7400	7477	786	7482	574	330	57.4913
mlin-fermikit	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	83.0274	90.4837	76.7064	50.3167	13226	1391	12935	3928	3882	98.8289
ndellapenna-hhga	INDEL	I16_PLUS	*	*	92.8570	90.4814	95.3607	63.8712	5770	607	5776	281	194	69.0391
mlin-fermikit	INDEL	D6_15	HG002complexvar	het	92.4085	90.4808	94.4202	55.5173	2823	297	2809	166	152	91.5663
anovak-vg	INDEL	D1_5	segdup	*	91.5860	90.4805	92.7189	94.7590	998	105	1006	79	52	65.8228
mlin-fermikit	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	86.7858	90.4797	83.3817	76.0514	1226	129	1149	229	205	89.5197
anovak-vg	SNP	*	map_l125_m2_e0	het	77.4707	90.4768	67.7339	78.1138	26526	2792	26255	12507	2731	21.8358
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	92.6829	90.4762	95.0000	99.3670	38	4	38	2	0	0.0000
asubramanian-gatk	INDEL	*	map_l150_m1_e0	hetalt	95.0000	90.4762	100.0000	95.2607	19	2	20	0	0
asubramanian-gatk	INDEL	*	map_l150_m2_e0	hetalt	95.0000	90.4762	100.0000	95.8763	19	2	20	0	0
asubramanian-gatk	INDEL	D6_15	map_l100_m1_e0	het	91.9355	90.4762	93.4426	91.7344	114	12	114	8	2	25.0000
asubramanian-gatk	INDEL	I16_PLUS	map_siren	homalt	92.6829	90.4762	95.0000	95.0249	19	2	19	1	1	100.0000
mlin-fermikit	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	68.8406	90.4762	55.5556	99.9404	19	2	20	16	16	100.0000
raldana-dualsentieon	INDEL	*	map_l125_m2_e0	hetalt	95.0000	90.4762	100.0000	91.2442	38	4	38	0	0
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	77.5510	90.4762	67.8571	99.9391	19	2	19	9	7	77.7778
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	95.0000	90.4762	100.0000	99.9564	19	2	19	0	0
rpoplin-dv42	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	92.6528	90.4762	94.9367	73.7977	152	16	150	8	7	87.5000
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	80.3252	90.4762	72.2222	91.7808	38	4	39	15	2	13.3333
ckim-isaac	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	95.0000	90.4762	100.0000	24.0000	19	2	19	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	91.5663	90.4762	92.6829	99.3618	38	4	38	3	0	0.0000
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	95.0000	90.4762	100.0000	97.4342	38	4	38	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	91.5663	90.4762	92.6829	99.3598	38	4	38	3	0	0.0000
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	80.8511	90.4762	73.0769	99.9443	19	2	19	7	6	85.7143
egarrison-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	93.8272	90.4762	97.4359	61.7647	76	8	76	2	2	100.0000
jlack-gatk	INDEL	I16_PLUS	map_siren	homalt	90.4762	90.4762	90.4762	95.1276	19	2	19	2	1	50.0000
jli-custom	INDEL	*	map_l125_m2_e0	hetalt	95.0000	90.4762	100.0000	93.1777	38	4	38	0	0
jlack-gatk	INDEL	*	map_l125_m2_e0	hetalt	93.8272	90.4762	97.4359	93.7500	38	4	38	1	0	0.0000
jlack-gatk	INDEL	*	map_l150_m1_e0	hetalt	92.6829	90.4762	95.0000	95.2830	19	2	19	1	0	0.0000
jlack-gatk	INDEL	*	map_l150_m2_e0	hetalt	92.6829	90.4762	95.0000	95.8506	19	2	19	1	0	0.0000
jlack-gatk	INDEL	D1_5	map_siren	hetalt	95.0000	90.4762	100.0000	90.7543	76	8	76	0	0
jpowers-varprowl	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	81.1610	90.4762	73.5849	91.1519	38	4	39	14	2	14.2857
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	95.0000	90.4762	100.0000	99.9546	19	2	20	0	0
jpowers-varprowl	INDEL	*	map_l250_m2_e0	het	91.1271	90.4762	91.7874	97.0352	190	20	190	17	10	58.8235
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	95.0000	90.4762	100.0000	99.0568	38	4	40	0	0
eyeh-varpipe	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	38.3408	90.4762	24.3243	23.7113	19	2	18	56	55	98.2143
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	95.0000	90.4762	100.0000	54.7619	19	2	19	0	0
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	92.1833	90.4762	93.9560	39.3333	418	44	171	11	10	90.9091
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	95.0000	90.4762	100.0000	97.4342	38	4	38	0	0
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	95.0000	90.4762	100.0000	99.3499	38	4	38	0	0
anovak-vg	SNP	*	map_l125_m1_e0	het	77.1793	90.4691	67.2939	76.7918	25686	2706	25425	12357	2688	21.7529
anovak-vg	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	92.6984	90.4665	95.0431	49.8920	446	47	441	23	12	52.1739
gduggal-snapvard	INDEL	I1_5	segdup	*	91.3324	90.4627	92.2190	95.0889	958	101	960	81	68	83.9506
jlack-gatk	INDEL	D6_15	HG002compoundhet	hetalt	94.7748	90.4552	99.5278	24.3596	7373	778	7377	35	30	85.7143
rpoplin-dv42	INDEL	I16_PLUS	HG002complexvar	*	93.7832	90.4507	97.3706	62.1815	1184	125	1185	32	29	90.6250
ndellapenna-hhga	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	93.0752	90.4494	95.8580	71.6918	161	17	162	7	6	85.7143
hfeng-pmm3	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.7059	90.4494	99.3827	71.6783	161	17	161	1	1	100.0000
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	88.9612	90.4472	87.5233	61.4224	445	47	470	67	49	73.1343

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