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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
34601-34650 / 86044 show all
hfeng-pmm3INDEL*map_l125_m2_e1hetalt
95.1220
90.6977
100.0000
93.2642
3943900
qzeng-customINDELD6_15func_cds*
85.9267
90.6977
81.6327
50.0000
3944091
11.1111
ckim-dragenINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
95.1220
90.6977
100.0000
78.2828
7888600
jpowers-varprowlINDELD16_PLUS*het
70.8402
90.6933
58.1179
67.6572
2865294287820742042
98.4571
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.6844
90.6909
99.0458
31.4136
154915915571515
100.0000
ghariani-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
63.7991
90.6900
49.2081
87.2696
828858708982
0.2227
astatham-gatkINDELD16_PLUSHG002complexvarhetalt
93.7269
90.6883
96.9762
47.9190
224234491414
100.0000
asubramanian-gatkINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.3618
90.6883
96.1977
79.5490
22423253106
60.0000
dgrover-gatkINDELD16_PLUSHG002complexvarhetalt
93.7238
90.6883
96.9697
48.0899
224234481414
100.0000
raldana-dualsentieonINDEL*map_sirenhetalt
95.1168
90.6883
100.0000
85.1022
2242322600
ckim-isaacSNPtvHG002complexvarhomalt
95.1060
90.6877
99.9768
19.5838
862548857862772016
80.0000
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
90.4890
90.6867
90.2922
79.9205
9649995810383
80.5825
gduggal-snapplatSNP*map_l100_m0_e0*
93.1162
90.6854
95.6808
80.1096
297823059297951345754
56.0595
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.1958
90.6831
95.8516
40.5987
20177207320125871757
86.9116
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.7739
90.6810
99.2537
66.3317
2532626621
50.0000
ltrigg-rtg1INDELI6_15HG002compoundhet*
94.7100
90.6791
99.1159
32.9210
795881878487064
91.4286
raldana-dualsentieonINDELI6_15HG002complexvarhetalt
95.1115
90.6787
100.0000
54.5670
1109114114900
gduggal-snapplatSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
94.2325
90.6751
98.0805
79.1908
158516315843113
41.9355
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
87.1392
90.6725
83.8710
73.1533
8368688417086
50.5882
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
91.1080
90.6710
91.5493
68.5493
554575204846
95.8333
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
89.6918
90.6694
88.7352
58.9619
447464495736
63.1579
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
93.4915
90.6675
96.4971
60.4318
57325905730208164
78.8462
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
93.4915
90.6675
96.4971
60.4318
57325905730208164
78.8462
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
93.1507
90.6667
95.7746
60.9890
6876832
66.6667
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
93.7931
90.6667
97.1429
62.7660
6876822
100.0000
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
93.1507
90.6667
95.7746
59.6591
6876832
66.6667
cchapple-customINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
93.1784
90.6667
95.8333
42.4000
6876932
66.6667
ckim-gatkINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1912
90.6623
98.0059
66.8030
167017216713428
82.3529
ciseli-customINDELD1_5segdup*
89.4589
90.6618
88.2875
95.2028
100010399513280
60.6061
gduggal-snapfbINDEL*map_l150_m0_e0*
91.9264
90.6615
93.2271
91.6942
466484683411
32.3529
ciseli-customSNPtimap_l100_m1_e0homalt
90.9965
90.6459
91.3498
59.1340
1628016801624215381227
79.7789
anovak-vgSNP*map_siren*
88.0035
90.6441
85.5124
59.7358
13254713681130863221715290
23.8600
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
93.7307
90.6437
97.0353
73.3675
12111251211373
8.1081
jpowers-varprowlINDELD1_5map_l250_m1_e0*
92.5373
90.6433
94.5122
95.5544
1551615594
44.4444
jmaeng-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.3454
90.6386
94.1176
50.5132
24982582496156154
98.7179
anovak-vgSNPtvmap_l150_m2_e0het
75.9484
90.6371
65.3567
81.6125
657367965693482815
23.4061
bgallagher-sentieonINDELI16_PLUSHG002compoundhethetalt
95.0877
90.6355
100.0000
45.8521
1897196191900
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
92.4568
90.6336
94.3548
75.3152
1974204175510595
90.4762
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.9543
90.6336
99.7076
43.5644
3293434111
100.0000
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
94.8006
90.6323
99.3707
28.9674
15481601579109
90.0000
anovak-vgSNPtvmap_l150_m1_e0het
75.5604
90.6277
64.7889
80.5286
629565162913419787
23.0184
gduggal-bwavardINDELI1_5HG002complexvar*
92.2209
90.6273
93.8716
50.7362
3023631272924119091668
87.3756
eyeh-varpipeINDELD6_15map_l150_m0_e0*
90.3114
90.6250
90.0000
92.9577
2933644
100.0000
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
91.4848
90.6250
92.3611
89.3727
14515133112
18.1818
egarrison-hhgaINDELD6_15map_l125_m2_e1*
92.4953
90.6250
94.4444
89.0720
1161211975
71.4286
asubramanian-gatkINDELD6_15map_l125_m2_e1*
93.9271
90.6250
97.4790
92.6407
1161211631
33.3333
ndellapenna-hhgaINDELD6_15map_l125_m2_e1*
91.4293
90.6250
92.2481
89.5037
11612119105
50.0000
ndellapenna-hhgaINDELD6_15map_l150_m0_e0*
92.2524
90.6250
93.9394
93.7262
2933121
50.0000
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
88.7305
90.6250
86.9136
84.8258
348363525321
39.6226
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.3555
90.6219
98.4100
63.4241
41416428641653673294
43.6850