PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34101-34150 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 71.0280 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 74.4856 | 62 | 6 | 62 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.6863 | 62 | 6 | 62 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | homalt | 93.9394 | 91.1765 | 96.8750 | 88.8889 | 31 | 3 | 31 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.3846 | 91.1765 | 100.0000 | 89.9676 | 31 | 3 | 31 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | HG002compoundhet | homalt | 94.3411 | 91.1747 | 97.7352 | 50.1035 | 3089 | 299 | 3064 | 71 | 67 | 94.3662 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | homalt | 93.1015 | 91.1747 | 95.1114 | 51.4204 | 3089 | 299 | 3074 | 158 | 115 | 72.7848 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.5778 | 91.1697 | 96.1165 | 54.9134 | 14630 | 1417 | 15642 | 632 | 605 | 95.7278 | |
| asubramanian-gatk | INDEL | I6_15 | HG002compoundhet | * | 93.0480 | 91.1691 | 95.0059 | 37.8731 | 8001 | 775 | 8009 | 421 | 405 | 96.1995 | |
| raldana-dualsentieon | INDEL | * | * | hetalt | 95.3681 | 91.1677 | 99.9742 | 56.5406 | 23008 | 2229 | 23230 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 92.7769 | 91.1672 | 94.4444 | 92.4314 | 289 | 28 | 289 | 17 | 9 | 52.9412 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.4770 | 91.1661 | 45.2459 | 46.8023 | 258 | 25 | 414 | 501 | 450 | 89.8204 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.6307 | 91.1655 | 96.2330 | 58.6113 | 2198 | 213 | 2197 | 86 | 83 | 96.5116 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.3273 | 91.1635 | 99.8897 | 40.2875 | 5375 | 521 | 5435 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.3273 | 91.1635 | 99.8897 | 40.2875 | 5375 | 521 | 5435 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | D1_5 | * | * | 87.8248 | 91.1601 | 84.7249 | 55.7284 | 133771 | 12972 | 160064 | 28858 | 22853 | 79.1912 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | hetalt | 95.3715 | 91.1597 | 99.9913 | 50.4712 | 22954 | 2226 | 23068 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.9006 | 91.1550 | 92.6585 | 71.5146 | 876 | 85 | 833 | 66 | 61 | 92.4242 | |
| gduggal-snapfb | INDEL | * | func_cds | homalt | 95.3704 | 91.1504 | 100.0000 | 31.5615 | 206 | 20 | 206 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | * | 93.4813 | 91.1488 | 95.9364 | 78.9527 | 19844 | 1927 | 19855 | 841 | 482 | 57.3127 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7214 | 91.1483 | 98.5861 | 64.1475 | 762 | 74 | 767 | 11 | 6 | 54.5455 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | * | 77.4944 | 91.1475 | 67.3986 | 95.4162 | 278 | 27 | 399 | 193 | 44 | 22.7979 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.3676 | 91.1466 | 93.6218 | 50.4528 | 2512 | 244 | 2510 | 171 | 166 | 97.0760 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.6433 | 91.1458 | 86.2745 | 46.1741 | 175 | 17 | 176 | 28 | 19 | 67.8571 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 84.7458 | 91.1458 | 79.1855 | 59.0741 | 175 | 17 | 175 | 46 | 43 | 93.4783 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 92.6354 | 91.1441 | 94.1762 | 35.9848 | 16642 | 1617 | 17303 | 1070 | 870 | 81.3084 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.4420 | 91.1431 | 95.8599 | 59.1279 | 1204 | 117 | 1204 | 52 | 39 | 75.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0506 | 91.1392 | 99.3127 | 70.7538 | 288 | 28 | 289 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | HG002compoundhet | * | 93.1060 | 91.1379 | 95.1609 | 67.4017 | 11261 | 1095 | 11268 | 573 | 557 | 97.2077 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.1777 | 91.1321 | 99.5992 | 56.5331 | 483 | 47 | 497 | 2 | 2 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.2859 | 91.1304 | 99.8384 | 63.0944 | 4942 | 481 | 4944 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.9615 | 91.1290 | 99.1304 | 86.7512 | 113 | 11 | 114 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m1_e0 | hetalt | 94.9615 | 91.1290 | 99.1304 | 85.4061 | 113 | 11 | 114 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 95.3586 | 91.1290 | 100.0000 | 86.6040 | 113 | 11 | 114 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.5744 | 91.1290 | 98.2906 | 87.2964 | 113 | 11 | 115 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8670 | 91.1290 | 98.9247 | 84.2195 | 226 | 22 | 276 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 93.7719 | 91.1243 | 96.5779 | 72.4607 | 1232 | 120 | 1270 | 45 | 42 | 93.3333 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 84.4901 | 91.1227 | 78.7575 | 78.2666 | 349 | 34 | 393 | 106 | 92 | 86.7925 | |
| raldana-dualsentieon | INDEL | I1_5 | HG002compoundhet | * | 94.0016 | 91.1217 | 97.0695 | 64.7141 | 11259 | 1097 | 11262 | 340 | 339 | 99.7059 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 62.4926 | 91.1184 | 47.5533 | 63.3312 | 831 | 81 | 826 | 911 | 847 | 92.9748 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| anovak-vg | SNP | * | map_l100_m2_e1 | het | 80.7046 | 91.1126 | 72.4307 | 73.6475 | 42730 | 4168 | 42251 | 16082 | 3449 | 21.4463 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.3488 | 91.1111 | 100.0000 | 95.5867 | 41 | 4 | 41 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.3314 | 91.1111 | 93.5849 | 51.5539 | 246 | 24 | 248 | 17 | 12 | 70.5882 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.1304 | 91.1111 | 87.2340 | 95.4369 | 82 | 8 | 82 | 12 | 4 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | * | 82.4121 | 91.1111 | 75.2294 | 95.6746 | 82 | 8 | 82 | 27 | 4 | 14.8148 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 91.1111 | 0.0000 | 0.0000 | 41 | 4 | 0 | 0 | 0 | ||