PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33751-33800 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.5025 | 119 | 11 | 121 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.8274 | 91.5346 | 92.1220 | 61.6285 | 2022 | 187 | 2023 | 173 | 118 | 68.2081 | |
| anovak-vg | SNP | tv | map_l125_m2_e0 | het | 77.3239 | 91.5342 | 66.9329 | 78.0559 | 9558 | 884 | 9554 | 4720 | 1043 | 22.0975 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.5795 | 91.5332 | 100.0000 | 25.9259 | 1200 | 111 | 1200 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | HG002compoundhet | hetalt | 95.3278 | 91.5310 | 99.4533 | 27.1869 | 7814 | 723 | 7823 | 43 | 37 | 86.0465 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6399 | 91.5309 | 97.9675 | 67.1249 | 1686 | 156 | 1687 | 35 | 30 | 85.7143 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e0 | * | 93.0771 | 91.5301 | 94.6773 | 88.3364 | 2010 | 186 | 2010 | 113 | 79 | 69.9115 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | * | 92.2263 | 91.5275 | 92.9358 | 54.4267 | 4386 | 406 | 4473 | 340 | 144 | 42.3529 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7368 | 91.5254 | 98.1818 | 87.6957 | 54 | 5 | 54 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 89.2562 | 91.5254 | 87.0968 | 90.7186 | 54 | 5 | 54 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7049 | 91.5254 | 98.1132 | 74.6411 | 54 | 5 | 52 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | het | 95.5752 | 91.5254 | 100.0000 | 78.2427 | 54 | 5 | 52 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | * | 93.8224 | 91.5254 | 96.2376 | 90.4986 | 486 | 45 | 486 | 19 | 11 | 57.8947 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | het | 94.7368 | 91.5254 | 98.1818 | 84.8485 | 54 | 5 | 54 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | * | 93.8735 | 91.5222 | 96.3489 | 90.4328 | 475 | 44 | 475 | 18 | 11 | 61.1111 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.6576 | 91.5216 | 95.8958 | 60.2572 | 1209 | 112 | 1215 | 52 | 40 | 76.9231 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.3984 | 91.5194 | 95.3560 | 62.7021 | 259 | 24 | 308 | 15 | 12 | 80.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.5656 | 91.5183 | 93.6371 | 69.0667 | 4575 | 424 | 4562 | 310 | 290 | 93.5484 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.5656 | 91.5183 | 93.6371 | 69.0667 | 4575 | 424 | 4562 | 310 | 290 | 93.5484 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.8478 | 91.5179 | 84.4608 | 66.3644 | 1640 | 152 | 1723 | 317 | 119 | 37.5394 | |
| anovak-vg | SNP | tv | map_l125_m1_e0 | het | 77.0260 | 91.5169 | 66.4968 | 76.6933 | 9267 | 859 | 9265 | 4668 | 1021 | 21.8723 | |
| ckim-isaac | SNP | tv | HG002complexvar | * | 95.4727 | 91.5159 | 99.7871 | 19.3101 | 225271 | 20884 | 225437 | 481 | 401 | 83.3680 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002compoundhet | * | 93.3379 | 91.5109 | 95.2392 | 35.4681 | 8031 | 745 | 8042 | 402 | 334 | 83.0846 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9883 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m1_e0 | * | 94.1888 | 91.5094 | 97.0297 | 93.4755 | 97 | 9 | 98 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.4887 | 91.5094 | 95.5556 | 87.2521 | 97 | 9 | 86 | 4 | 2 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | het | 95.0980 | 91.5094 | 98.9796 | 92.1222 | 97 | 9 | 97 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9883 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9310 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.8148 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | * | 92.3810 | 91.5094 | 93.2692 | 96.3636 | 97 | 9 | 97 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | * | 93.0277 | 91.5045 | 94.6026 | 87.5701 | 1928 | 179 | 1928 | 110 | 77 | 70.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 90.0691 | 91.5033 | 88.6792 | 75.9091 | 140 | 13 | 141 | 18 | 12 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.2143 | 91.5033 | 87.0370 | 76.6234 | 140 | 13 | 141 | 21 | 16 | 76.1905 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8197 | 91.5020 | 96.2578 | 89.2801 | 463 | 43 | 463 | 18 | 11 | 61.1111 | |
| ckim-isaac | INDEL | D1_5 | HG002complexvar | * | 94.1980 | 91.4993 | 97.0606 | 47.3235 | 29934 | 2781 | 29752 | 901 | 456 | 50.6104 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.4306 | 91.4992 | 99.7150 | 67.7457 | 4962 | 461 | 4898 | 14 | 5 | 35.7143 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.4306 | 91.4992 | 99.7150 | 67.7457 | 4962 | 461 | 4898 | 14 | 5 | 35.7143 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4994 | 91.4980 | 97.7044 | 66.4420 | 678 | 63 | 681 | 16 | 7 | 43.7500 | |
| jlack-gatk | INDEL | * | map_siren | hetalt | 95.3604 | 91.4980 | 99.5633 | 86.9812 | 226 | 21 | 228 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.8610 | 91.4980 | 98.4807 | 64.9564 | 226 | 21 | 713 | 11 | 8 | 72.7273 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.7925 | 91.4973 | 96.2058 | 58.9950 | 2206 | 205 | 2206 | 87 | 83 | 95.4023 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.2805 | 91.4956 | 99.3921 | 56.4238 | 312 | 29 | 327 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | * | het | 91.7291 | 91.4941 | 91.9653 | 44.9050 | 10606 | 986 | 10084 | 881 | 656 | 74.4608 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | * | 93.5245 | 91.4894 | 95.6522 | 92.2166 | 43 | 4 | 44 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.5055 | 91.4894 | 97.7273 | 90.5579 | 43 | 4 | 43 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 84.9656 | 91.4894 | 79.3103 | 93.9959 | 43 | 4 | 23 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | * | 95.5556 | 91.4894 | 100.0000 | 89.7375 | 43 | 4 | 43 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 89.7651 | 91.4894 | 88.1046 | 61.3701 | 2021 | 188 | 2022 | 273 | 186 | 68.1319 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | * | 85.3598 | 91.4894 | 80.0000 | 93.4132 | 43 | 4 | 44 | 11 | 1 | 9.0909 | |