PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32701-32750 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | * | HG002compoundhet | het | 95.9874 | 92.3755 | 99.8932 | 43.8424 | 13097 | 1081 | 13096 | 14 | 7 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.7596 | 92.3754 | 99.4012 | 59.5152 | 315 | 26 | 332 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.2601 | 92.3740 | 88.2408 | 73.6079 | 2786 | 230 | 2844 | 379 | 139 | 36.6755 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 90.5655 | 92.3733 | 88.8270 | 56.6366 | 16460 | 1359 | 15479 | 1947 | 1601 | 82.2291 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.7077 | 92.3701 | 95.0845 | 58.6667 | 569 | 47 | 619 | 32 | 28 | 87.5000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | * | 93.6112 | 92.3701 | 94.8860 | 83.6796 | 1707 | 141 | 1707 | 92 | 63 | 68.4783 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 75.2099 | 92.3698 | 63.4269 | 72.4538 | 1259 | 104 | 1266 | 730 | 77 | 10.5479 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | het | 93.0063 | 92.3697 | 93.6518 | 83.5542 | 19587 | 1618 | 19606 | 1329 | 738 | 55.5305 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.3918 | 92.3695 | 96.5046 | 61.7780 | 3680 | 304 | 3672 | 133 | 128 | 96.2406 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7829 | 92.3684 | 99.4595 | 64.7619 | 351 | 29 | 368 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7836 | 92.3684 | 99.4609 | 59.6300 | 351 | 29 | 369 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.9688 | 92.3674 | 93.5780 | 71.2618 | 714 | 59 | 714 | 49 | 29 | 59.1837 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | het | 91.8595 | 92.3664 | 91.3580 | 82.6367 | 121 | 10 | 148 | 14 | 13 | 92.8571 | |
| jmaeng-gatk | INDEL | * | HG002compoundhet | * | 93.6190 | 92.3632 | 94.9094 | 62.9257 | 27672 | 2288 | 27556 | 1478 | 1464 | 99.0528 | |
| jpowers-varprowl | SNP | * | HG002compoundhet | het | 94.4520 | 92.3614 | 96.6395 | 53.1760 | 13095 | 1083 | 13286 | 462 | 40 | 8.6580 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.9929 | 92.3611 | 95.6835 | 84.8474 | 1197 | 99 | 1197 | 54 | 26 | 48.1481 | |
| ghariani-varprowl | INDEL | * | func_cds | * | 91.6388 | 92.3596 | 90.9292 | 61.0680 | 411 | 34 | 411 | 41 | 30 | 73.1707 | |
| ckim-isaac | SNP | * | HG002complexvar | * | 95.9550 | 92.3552 | 99.8467 | 16.9098 | 696714 | 57671 | 697067 | 1070 | 847 | 79.1589 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.3280 | 92.3546 | 90.3239 | 69.1828 | 2271 | 188 | 2231 | 239 | 158 | 66.1088 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 77.2126 | 92.3546 | 66.3363 | 73.7008 | 2271 | 188 | 2276 | 1155 | 1093 | 94.6320 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.8373 | 92.3541 | 97.4576 | 76.1616 | 459 | 38 | 460 | 12 | 12 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.0193 | 92.3530 | 97.8441 | 60.3645 | 12705 | 1052 | 12662 | 279 | 130 | 46.5950 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.0193 | 92.3530 | 97.8441 | 60.3645 | 12705 | 1052 | 12662 | 279 | 130 | 46.5950 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.8555 | 92.3515 | 95.4093 | 77.3915 | 3731 | 309 | 3450 | 166 | 128 | 77.1084 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4534 | 92.3513 | 94.5822 | 43.0987 | 9611 | 796 | 14228 | 815 | 315 | 38.6503 | |
| qzeng-custom | INDEL | D6_15 | * | * | 90.6408 | 92.3501 | 88.9936 | 51.4321 | 24096 | 1996 | 25413 | 3143 | 1242 | 39.5164 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1087 | 92.3483 | 98.0392 | 62.9283 | 350 | 29 | 350 | 7 | 6 | 85.7143 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002compoundhet | * | 94.8024 | 92.3472 | 97.3917 | 52.6892 | 1979 | 164 | 1979 | 53 | 52 | 98.1132 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.4550 | 92.3423 | 96.6667 | 63.0282 | 205 | 17 | 203 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3553 | 92.3423 | 98.5714 | 56.3410 | 205 | 17 | 207 | 3 | 1 | 33.3333 | |
| anovak-vg | SNP | tv | map_l100_m1_e0 | het | 79.8335 | 92.3396 | 70.3109 | 72.6600 | 14236 | 1181 | 14226 | 6007 | 1268 | 21.1087 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m2_e1 | homalt | 95.4167 | 92.3387 | 98.7069 | 85.2605 | 229 | 19 | 229 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8240 | 92.3387 | 97.4468 | 85.7230 | 229 | 19 | 229 | 6 | 1 | 16.6667 | |
| mlin-fermikit | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6799 | 92.3387 | 97.1429 | 70.2456 | 916 | 76 | 918 | 27 | 3 | 11.1111 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | het | 93.4783 | 92.3313 | 94.6541 | 88.2916 | 301 | 25 | 301 | 17 | 10 | 58.8235 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.8706 | 92.3291 | 99.6947 | 44.2078 | 662 | 55 | 653 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.4252 | 92.3274 | 98.7380 | 54.1740 | 3598 | 299 | 3599 | 46 | 39 | 84.7826 | |
| eyeh-varpipe | INDEL | * | HG002complexvar | * | 93.6611 | 92.3263 | 95.0350 | 54.2841 | 71034 | 5904 | 71760 | 3749 | 3600 | 96.0256 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.8906 | 92.3251 | 47.6872 | 81.6922 | 2442 | 203 | 2464 | 2703 | 33 | 1.2209 | |
| ckim-gatk | INDEL | I6_15 | * | hetalt | 95.9700 | 92.3167 | 99.9244 | 35.7056 | 7894 | 657 | 7935 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.1379 | 92.3154 | 98.1386 | 59.7586 | 925 | 77 | 949 | 18 | 6 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | hetalt | 95.8717 | 92.3153 | 99.7130 | 50.6553 | 23245 | 1935 | 23276 | 67 | 66 | 98.5075 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | het | 92.7489 | 92.3145 | 93.1874 | 87.6725 | 18798 | 1565 | 18822 | 1376 | 752 | 54.6512 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002compoundhet | * | 95.5863 | 92.3089 | 99.1049 | 60.5859 | 11294 | 941 | 11293 | 102 | 95 | 93.1373 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_siren | * | 92.9353 | 92.3077 | 93.5714 | 92.9895 | 132 | 11 | 131 | 9 | 1 | 11.1111 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 92.3077 | 92.3077 | 85.3933 | 12 | 1 | 12 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.3125 | 12 | 1 | 12 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 94.1964 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 94.8177 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 94.8473 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |