PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32551-32600 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 76.4026 | 92.5078 | 65.0735 | 61.5548 | 889 | 72 | 1062 | 570 | 543 | 95.2632 | |
| ckim-dragen | INDEL | * | HG002compoundhet | hetalt | 96.0007 | 92.5060 | 99.7699 | 50.0702 | 23293 | 1887 | 23417 | 54 | 54 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.7735 | 92.5000 | 97.1616 | 81.7457 | 444 | 36 | 445 | 13 | 12 | 92.3077 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 34.5747 | 92.5000 | 21.2608 | 78.3172 | 666 | 54 | 715 | 2648 | 56 | 2.1148 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 94.8718 | 92.5000 | 97.3684 | 93.0657 | 37 | 3 | 37 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.0057 | 37 | 3 | 37 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.3333 | 37 | 3 | 37 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_siren | het | 81.0642 | 92.5000 | 72.1448 | 84.9096 | 259 | 21 | 259 | 100 | 93 | 93.0000 | |
| jli-custom | INDEL | D6_15 | HG002complexvar | hetalt | 94.3987 | 92.4975 | 96.3796 | 46.9642 | 937 | 76 | 985 | 37 | 36 | 97.2973 | |
| jpowers-varprowl | SNP | * | map_l250_m0_e0 | het | 90.2202 | 92.4967 | 88.0531 | 95.2498 | 1393 | 113 | 1393 | 189 | 29 | 15.3439 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.5522 | 92.4908 | 79.5820 | 75.9660 | 505 | 41 | 495 | 127 | 74 | 58.2677 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.7839 | 92.4901 | 99.3209 | 86.5999 | 1170 | 95 | 1170 | 8 | 3 | 37.5000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5222 | 92.4891 | 94.5785 | 50.7408 | 2549 | 207 | 2547 | 146 | 141 | 96.5753 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.4024 | 92.4861 | 94.3370 | 90.4803 | 1994 | 162 | 1999 | 120 | 81 | 67.5000 | |
| gduggal-snapplat | SNP | ti | map_l125_m2_e1 | * | 94.3667 | 92.4859 | 96.3257 | 81.1411 | 28272 | 2297 | 28287 | 1079 | 590 | 54.6803 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.0368 | 92.4855 | 97.7328 | 30.1370 | 1600 | 130 | 1595 | 37 | 31 | 83.7838 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.3821 | 92.4855 | 82.8125 | 68.7551 | 320 | 26 | 318 | 66 | 63 | 95.4545 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6730 | 92.4844 | 99.0893 | 41.0583 | 3261 | 265 | 3808 | 35 | 33 | 94.2857 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.6730 | 92.4844 | 99.0893 | 41.0583 | 3261 | 265 | 3808 | 35 | 33 | 94.2857 | |
| ghariani-varprowl | INDEL | I6_15 | HG002complexvar | het | 82.0261 | 92.4841 | 73.6930 | 59.9920 | 2178 | 177 | 2213 | 790 | 772 | 97.7215 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.0820 | 92.4836 | 99.9718 | 25.6399 | 3519 | 286 | 3543 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | * | 94.0691 | 92.4818 | 95.7118 | 34.3777 | 2165 | 176 | 2165 | 97 | 96 | 98.9691 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.2384 | 92.4812 | 98.1651 | 88.0482 | 123 | 10 | 107 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | * | 93.8573 | 92.4805 | 95.2757 | 55.2360 | 30255 | 2460 | 30130 | 1494 | 1377 | 92.1687 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.3680 | 92.4804 | 96.3342 | 31.9134 | 16886 | 1373 | 16845 | 641 | 574 | 89.5476 | |
| ckim-dragen | INDEL | * | * | hetalt | 95.9597 | 92.4793 | 99.7124 | 57.0557 | 23339 | 1898 | 23575 | 68 | 68 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0708 | 92.4769 | 99.9552 | 27.1601 | 4413 | 359 | 4466 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | het | 34.5608 | 92.4769 | 21.2515 | 68.3690 | 1598 | 130 | 1569 | 5814 | 5564 | 95.7000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.7982 | 92.4763 | 97.2396 | 66.7223 | 1561 | 127 | 1550 | 44 | 15 | 34.0909 | |
| gduggal-bwavard | INDEL | I1_5 | HG002complexvar | homalt | 96.0632 | 92.4747 | 99.9414 | 32.6716 | 12436 | 1012 | 11931 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | SNP | * | HG002compoundhet | het | 96.0618 | 92.4743 | 99.9390 | 43.1383 | 13111 | 1067 | 13110 | 8 | 4 | 50.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0710 | 92.4735 | 99.9597 | 37.1168 | 2445 | 199 | 2481 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.8217 | 92.4731 | 99.4220 | 70.1209 | 172 | 14 | 172 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.7582 | 92.4731 | 97.1591 | 69.7074 | 172 | 14 | 171 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.7511 | 92.4731 | 99.2701 | 67.4197 | 258 | 21 | 272 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 95.8217 | 92.4731 | 99.4220 | 87.0023 | 344 | 28 | 344 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.8307 | 92.4731 | 99.4413 | 69.4539 | 172 | 14 | 178 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | * | 93.6073 | 92.4716 | 94.7712 | 89.9313 | 1302 | 106 | 1305 | 72 | 21 | 29.1667 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | * | 85.1445 | 92.4716 | 78.8934 | 90.8735 | 1302 | 106 | 1768 | 473 | 151 | 31.9239 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | * | 95.1894 | 92.4704 | 98.0731 | 32.6928 | 8351 | 680 | 8347 | 164 | 158 | 96.3415 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e1 | * | 93.6537 | 92.4703 | 94.8677 | 84.4955 | 1793 | 146 | 1793 | 97 | 64 | 65.9794 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.3320 | 92.4675 | 69.4643 | 60.8392 | 356 | 29 | 389 | 171 | 153 | 89.4737 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.4686 | 92.4642 | 88.5573 | 75.8297 | 42258 | 3444 | 42999 | 5556 | 1706 | 30.7055 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.4686 | 92.4642 | 88.5573 | 75.8297 | 42258 | 3444 | 42999 | 5556 | 1706 | 30.7055 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.7796 | 92.4607 | 83.5496 | 48.0211 | 7763 | 633 | 7725 | 1521 | 1474 | 96.9099 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.8359 | 92.4591 | 99.4688 | 63.5748 | 8595 | 701 | 8613 | 46 | 42 | 91.3043 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | * | 94.7899 | 92.4590 | 97.2414 | 82.6762 | 282 | 23 | 282 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9599 | 92.4574 | 99.7382 | 69.8024 | 380 | 31 | 381 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | HG002compoundhet | * | 94.2778 | 92.4567 | 96.1721 | 36.2689 | 8114 | 662 | 8115 | 323 | 321 | 99.3808 | |
| ckim-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 93.3333 | 92.4528 | 94.2308 | 93.2292 | 49 | 4 | 49 | 3 | 1 | 33.3333 | |