PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3201-3250 / 86044 show all
astatham-gatkSNPtimap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
70.0000
2402400
astatham-gatkSNPtimap_l125_m2_e1hetalt
100.0000
100.0000
100.0000
70.0000
2402400
astatham-gatkSNPtimap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
85.0000
30300
astatham-gatkSNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
70.5882
1501500
astatham-gatkSNPtimap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
74.1379
1501500
astatham-gatkSNPtimap_l150_m2_e1hetalt
100.0000
100.0000
100.0000
74.1379
1501500
astatham-gatkSNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
84.0000
40400
astatham-gatkSNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
82.7586
50500
astatham-gatkSNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
82.7586
50500
astatham-gatkSNPtisegduphetalt
100.0000
100.0000
100.0000
98.5294
20200
astatham-gatkSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
41.6667
4104111
100.0000
astatham-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
astatham-gatkSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.6351
17040170400
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
86.6071
1501500
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
45.1539
481048100
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.6829
30300
astatham-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
86.6071
1501500
astatham-gatkSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.6522
10100
astatham-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.3608
90900
astatham-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
64.2857
50500
astatham-gatkSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
100.0000
100.0000
100.0000
93.4066
60600
astatham-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5714
10100
astatham-gatkSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.2456
10100
astatham-gatkSNPtvmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
68.0000
1601600
astatham-gatkSNPtvmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
75.6757
90900
astatham-gatkSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
89.2857
30300
astatham-gatkSNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
89.7436
40400
astatham-gatkSNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
89.3617
50500
astatham-gatkSNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
89.3617
50500
astatham-gatkSNPtvsegduphetalt
100.0000
100.0000
100.0000
96.6825
70700
asubramanian-gatkINDEL*decoy*
100.0000
100.0000
100.0000
99.9865
1001000
asubramanian-gatkINDEL*decoyhet
100.0000
100.0000
100.0000
99.9667
60600
asubramanian-gatkINDEL*decoyhetalt
100.0000
100.0000
100.0000
99.8285
10100
asubramanian-gatkINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9307
30300
asubramanian-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.7412
2002100
asubramanian-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4015
1201300
asubramanian-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.9697
30300
asubramanian-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.5238
50500
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.7732
1701800
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4714
1001100
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.5909
30300
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.6090
40400
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.3516
30300
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8495
20200
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.2963
10100