PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30951-31000 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | het | 93.2189 | 93.6698 | 92.7723 | 92.0061 | 4454 | 301 | 4454 | 347 | 85 | 24.4957 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.4301 | 93.6681 | 91.2243 | 68.7320 | 1287 | 87 | 1289 | 124 | 91 | 73.3871 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | homalt | 96.4845 | 93.6663 | 99.4776 | 87.2382 | 2307 | 156 | 2285 | 12 | 9 | 75.0000 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | * | 94.5816 | 93.6637 | 95.5178 | 92.5332 | 3459 | 234 | 4944 | 232 | 182 | 78.4483 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0289 | 93.6620 | 98.5185 | 45.3441 | 133 | 9 | 133 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.7273 | 93.6620 | 100.0000 | 38.0282 | 133 | 9 | 132 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7059 | 93.6606 | 99.9559 | 40.2439 | 15646 | 1059 | 15869 | 7 | 6 | 85.7143 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7059 | 93.6606 | 99.9559 | 40.2439 | 15646 | 1059 | 15869 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 84.1712 | 93.6594 | 76.4286 | 83.9334 | 1034 | 70 | 856 | 264 | 45 | 17.0455 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.3398 | 93.6585 | 93.0233 | 91.4274 | 192 | 13 | 200 | 15 | 11 | 73.3333 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.3398 | 93.6585 | 93.0233 | 91.4274 | 192 | 13 | 200 | 15 | 11 | 73.3333 | |
| gduggal-bwavard | INDEL | I1_5 | segdup | homalt | 96.3005 | 93.6575 | 99.0971 | 89.4222 | 443 | 30 | 439 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e1 | homalt | 96.5134 | 93.6575 | 99.5490 | 88.2016 | 886 | 60 | 883 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | hetalt | 96.5353 | 93.6572 | 99.5958 | 23.6915 | 7634 | 517 | 7638 | 31 | 31 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4633 | 93.6556 | 97.3422 | 77.2830 | 620 | 42 | 586 | 16 | 7 | 43.7500 | |
| ckim-gatk | INDEL | D1_5 | * | hetalt | 96.5155 | 93.6554 | 99.5558 | 62.7234 | 9595 | 650 | 9637 | 43 | 43 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.5572 | 93.6535 | 99.6466 | 65.5088 | 546 | 37 | 564 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | ti | map_l250_m1_e0 | homalt | 96.4416 | 93.6528 | 99.4016 | 87.2532 | 1505 | 102 | 1495 | 9 | 7 | 77.7778 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 64.9932 | 93.6517 | 49.7646 | 52.1813 | 7863 | 533 | 7822 | 7896 | 7660 | 97.0111 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 94.1710 | 93.6508 | 94.6970 | 88.3082 | 118 | 8 | 125 | 7 | 3 | 42.8571 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.6376 | 93.6473 | 97.7143 | 85.3434 | 855 | 58 | 855 | 20 | 10 | 50.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.3090 | 93.6464 | 70.2970 | 75.8518 | 339 | 23 | 284 | 120 | 119 | 99.1667 | |
| ckim-vqsr | INDEL | D1_5 | * | hetalt | 96.5103 | 93.6457 | 99.5557 | 62.7258 | 9594 | 651 | 9636 | 43 | 43 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6962 | 93.6431 | 99.9550 | 34.4875 | 13140 | 892 | 13333 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | * | 94.5716 | 93.6419 | 95.5200 | 92.2711 | 3358 | 228 | 4776 | 224 | 176 | 78.5714 | |
| cchapple-custom | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 93.6418 | 0.0000 | 0.0000 | 23579 | 1601 | 0 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6754 | 93.6402 | 99.9140 | 32.5015 | 1119 | 76 | 1162 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7097 | 93.6390 | 99.9886 | 31.7888 | 8700 | 591 | 8743 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7097 | 93.6390 | 99.9886 | 31.7888 | 8700 | 591 | 8743 | 1 | 0 | 0.0000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.6513 | 93.6387 | 99.8643 | 55.3874 | 736 | 50 | 736 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7156 | 93.6364 | 95.8199 | 71.7786 | 309 | 21 | 298 | 13 | 9 | 69.2308 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | het | 93.8347 | 93.6353 | 94.0349 | 85.0059 | 27452 | 1866 | 27477 | 1743 | 925 | 53.0694 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.1516 | 93.6330 | 98.8095 | 54.5946 | 250 | 17 | 249 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7068 | 93.6325 | 99.9899 | 31.2313 | 9808 | 667 | 9890 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.5301 | 93.6306 | 97.5083 | 72.4674 | 1176 | 80 | 1174 | 30 | 1 | 3.3333 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | * | hetalt | 96.4840 | 93.6261 | 99.5219 | 32.9957 | 7653 | 521 | 7702 | 37 | 37 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | het | 93.1615 | 93.6255 | 92.7022 | 90.7097 | 1410 | 96 | 1410 | 111 | 38 | 34.2342 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.2986 | 93.6245 | 97.0336 | 62.2347 | 3730 | 254 | 3729 | 114 | 103 | 90.3509 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m1_e0 | het | 96.3970 | 93.6214 | 99.3421 | 76.3363 | 455 | 31 | 453 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.2475 | 93.6213 | 99.0253 | 42.3352 | 6913 | 471 | 12598 | 124 | 72 | 58.0645 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4901 | 93.6175 | 99.5447 | 31.6449 | 8698 | 593 | 8745 | 40 | 40 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4901 | 93.6175 | 99.5447 | 31.6449 | 8698 | 593 | 8745 | 40 | 40 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.1271 | 93.6170 | 94.6429 | 77.7778 | 44 | 3 | 53 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m0_e0 | * | 96.7033 | 93.6170 | 100.0000 | 89.6471 | 44 | 3 | 44 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.4369 | 93.6170 | 78.5714 | 92.8844 | 44 | 3 | 44 | 12 | 12 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | homalt | 92.8474 | 93.6170 | 92.0904 | 71.4055 | 308 | 21 | 326 | 28 | 27 | 96.4286 | |