PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29401-29450 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.0000 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.2222 | 94.5946 | 100.0000 | 74.1007 | 35 | 2 | 36 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 88.3871 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0426 | 94.5944 | 99.6209 | 40.6185 | 15802 | 903 | 16029 | 61 | 60 | 98.3607 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0426 | 94.5944 | 99.6209 | 40.6185 | 15802 | 903 | 16029 | 61 | 60 | 98.3607 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.5830 | 94.5931 | 94.5728 | 62.5553 | 1732 | 99 | 1760 | 101 | 45 | 44.5545 | |
| dgrover-gatk | INDEL | * | HG002complexvar | hetalt | 96.4173 | 94.5931 | 98.3131 | 68.7891 | 3499 | 200 | 3730 | 64 | 63 | 98.4375 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.3394 | 94.5919 | 92.1197 | 68.0226 | 5772 | 330 | 5728 | 490 | 477 | 97.3469 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 81.8084 | 94.5910 | 72.0693 | 83.9601 | 1434 | 82 | 1414 | 548 | 14 | 2.5547 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.0172 | 94.5909 | 99.5711 | 30.5429 | 13273 | 759 | 13466 | 58 | 56 | 96.5517 | |
| ciseli-custom | INDEL | D1_5 | * | homalt | 89.1477 | 94.5898 | 84.2977 | 60.0900 | 46279 | 2647 | 46067 | 8581 | 7193 | 83.8247 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.3143 | 94.5890 | 94.0412 | 72.3901 | 909 | 52 | 868 | 55 | 49 | 89.0909 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.1557 | 94.5865 | 89.8467 | 85.0129 | 629 | 36 | 469 | 53 | 47 | 88.6792 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9622 | 94.5860 | 95.3414 | 70.8976 | 1188 | 68 | 1187 | 58 | 6 | 10.3448 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2204 | 94.5844 | 97.9140 | 85.0487 | 751 | 43 | 751 | 16 | 7 | 43.7500 | |
| ckim-isaac | INDEL | * | segdup | homalt | 97.0085 | 94.5833 | 99.5614 | 90.4632 | 908 | 52 | 908 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2004 | 94.5833 | 99.9665 | 44.9492 | 2951 | 169 | 2980 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | * | het | 90.4589 | 94.5825 | 86.6799 | 51.7766 | 10964 | 628 | 10952 | 1683 | 1653 | 98.2175 | |
| jpowers-varprowl | SNP | tv | map_l250_m2_e1 | * | 94.2423 | 94.5816 | 93.9053 | 92.0320 | 2758 | 158 | 2758 | 179 | 36 | 20.1117 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | het | 96.6071 | 94.5804 | 98.7226 | 91.3140 | 541 | 31 | 541 | 7 | 3 | 42.8571 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | het | 93.7547 | 94.5804 | 92.9432 | 94.2561 | 541 | 31 | 540 | 41 | 8 | 19.5122 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0103 | 94.5783 | 99.5706 | 64.1494 | 8792 | 504 | 8811 | 38 | 38 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.0831 | 94.5752 | 97.6399 | 85.2261 | 1447 | 83 | 1448 | 35 | 20 | 57.1429 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.0831 | 94.5752 | 97.6399 | 85.2261 | 1447 | 83 | 1448 | 35 | 20 | 57.1429 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | * | 94.9416 | 94.5736 | 95.3125 | 85.7936 | 244 | 14 | 244 | 12 | 6 | 50.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0831 | 94.5714 | 99.7319 | 36.2393 | 331 | 19 | 372 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.1245 | 94.5714 | 97.7295 | 52.4859 | 993 | 57 | 990 | 23 | 9 | 39.1304 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5857 | 94.5714 | 98.6877 | 35.6419 | 331 | 19 | 376 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5874 | 94.5714 | 98.6911 | 35.4730 | 331 | 19 | 377 | 5 | 5 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9979 | 94.5701 | 99.5536 | 89.9281 | 209 | 12 | 223 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.0972 | 94.5701 | 97.6744 | 91.2209 | 209 | 12 | 210 | 5 | 1 | 20.0000 | |
| cchapple-custom | INDEL | I1_5 | HG002compoundhet | * | 96.1801 | 94.5694 | 97.8466 | 66.9542 | 11685 | 671 | 13268 | 292 | 281 | 96.2329 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | * | 91.5803 | 94.5692 | 88.7745 | 87.1803 | 1811 | 104 | 1811 | 229 | 65 | 28.3843 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.3083 | 94.5687 | 98.1132 | 46.8227 | 296 | 17 | 156 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | * | hetalt | 96.8869 | 94.5680 | 99.3224 | 39.0920 | 1828 | 105 | 2052 | 14 | 14 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | * | 95.4584 | 94.5667 | 96.3671 | 93.6675 | 2019 | 116 | 2016 | 76 | 21 | 27.6316 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.1847 | 94.5662 | 99.9523 | 34.2023 | 2071 | 119 | 2094 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.0246 | 94.5657 | 99.6148 | 24.0847 | 6456 | 371 | 6465 | 25 | 25 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 87.0000 | 94.5652 | 80.5556 | 96.3624 | 174 | 10 | 174 | 42 | 4 | 9.5238 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | het | 76.9912 | 94.5652 | 64.9254 | 95.2347 | 87 | 5 | 87 | 47 | 45 | 95.7447 | |
| hfeng-pmm1 | INDEL | D6_15 | segdup | het | 96.1326 | 94.5652 | 97.7528 | 94.0067 | 87 | 5 | 87 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | * | 92.5532 | 94.5652 | 90.6250 | 97.1080 | 174 | 10 | 174 | 18 | 1 | 5.5556 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.8906 | 94.5652 | 97.2537 | 40.0019 | 6351 | 365 | 6268 | 177 | 104 | 58.7571 | |
| asubramanian-gatk | INDEL | D6_15 | segdup | het | 97.2067 | 94.5652 | 100.0000 | 96.0775 | 87 | 5 | 87 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 94.5648 | 0.0000 | 0.0000 | 2401 | 138 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | * | 95.8652 | 94.5619 | 97.2050 | 95.6651 | 313 | 18 | 313 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1639 | 94.5607 | 99.9146 | 34.3978 | 1130 | 65 | 1170 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1641 | 94.5607 | 99.9149 | 34.2105 | 1130 | 65 | 1174 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | * | 96.8582 | 94.5607 | 99.2701 | 82.3545 | 678 | 39 | 680 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | * | HG002complexvar | het | 92.4718 | 94.5577 | 90.4760 | 57.5873 | 43697 | 2515 | 43680 | 4598 | 4462 | 97.0422 | |