PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29351-29400 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | het | 96.7742 | 94.6215 | 99.0271 | 92.2359 | 1425 | 81 | 1425 | 14 | 5 | 35.7143 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 88.9148 | 94.6211 | 83.8576 | 74.5711 | 2023 | 115 | 2026 | 390 | 381 | 97.6923 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | * | * | 96.8429 | 94.6197 | 99.1732 | 57.6142 | 6419 | 365 | 6357 | 53 | 36 | 67.9245 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.0455 | 94.6164 | 99.6025 | 28.0867 | 7733 | 440 | 7768 | 31 | 29 | 93.5484 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | het | 94.7486 | 94.6159 | 94.8816 | 54.6441 | 19647 | 1118 | 20632 | 1113 | 329 | 29.5597 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.8875 | 94.6157 | 99.2711 | 52.0847 | 6537 | 372 | 6537 | 48 | 43 | 89.5833 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8547 | 94.6154 | 99.2026 | 23.5366 | 615 | 35 | 622 | 5 | 5 | 100.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.7262 | 94.6148 | 98.9340 | 44.5934 | 2407 | 137 | 2413 | 26 | 2 | 7.6923 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9108 | 94.6142 | 99.3217 | 39.0251 | 1827 | 104 | 2050 | 14 | 14 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9108 | 94.6142 | 99.3217 | 39.0251 | 1827 | 104 | 2050 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l250_m1_e0 | * | 94.8303 | 94.6137 | 95.0480 | 91.2876 | 6833 | 389 | 6833 | 356 | 90 | 25.2809 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6259 | 94.6129 | 98.7264 | 59.9168 | 2090 | 119 | 2093 | 27 | 24 | 88.8889 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.6703 | 94.6112 | 98.8210 | 55.5926 | 3687 | 210 | 3688 | 44 | 37 | 84.0909 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | * | 97.1607 | 94.6100 | 99.8528 | 80.6416 | 7460 | 425 | 7460 | 11 | 4 | 36.3636 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.2292 | 94.6078 | 100.0000 | 89.1011 | 193 | 11 | 194 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | het | 96.0719 | 94.6067 | 97.5831 | 85.2463 | 1263 | 72 | 1292 | 32 | 2 | 6.2500 | |
| hfeng-pmm2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.2091 | 94.5997 | 99.9664 | 68.3186 | 2978 | 170 | 2978 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | * | 95.9625 | 94.5985 | 97.3664 | 93.5930 | 1296 | 74 | 1294 | 35 | 13 | 37.1429 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m2_e1 | * | 90.4900 | 94.5977 | 86.7243 | 88.6844 | 823 | 47 | 1104 | 169 | 71 | 42.0118 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.9845 | 94.5971 | 99.4954 | 76.1070 | 5130 | 293 | 5127 | 26 | 10 | 38.4615 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.4189 | 94.5959 | 94.2426 | 73.7195 | 2013 | 115 | 1997 | 122 | 101 | 82.7869 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8778 | 94.5946 | 97.1963 | 63.5434 | 210 | 12 | 208 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 94.5946 | 0.0000 | 0.0000 | 70 | 4 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | func_cds | homalt | 96.5517 | 94.5946 | 98.5915 | 21.9780 | 70 | 4 | 70 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.1548 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4151 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.8696 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | * | 95.8904 | 94.5946 | 97.2222 | 95.7558 | 315 | 18 | 315 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2222 | 94.5946 | 100.0000 | 90.6615 | 35 | 2 | 24 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.6473 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | func_cds | homalt | 97.2222 | 94.5946 | 100.0000 | 23.9130 | 70 | 4 | 70 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 97.2222 | 94.5946 | 100.0000 | 89.6450 | 35 | 2 | 35 | 0 | 0 | ||
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2222 | 94.5946 | 100.0000 | 40.2102 | 455 | 26 | 455 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4151 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | * | 92.5926 | 94.5946 | 90.6736 | 97.1634 | 175 | 10 | 175 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.8696 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 80.9524 | 70 | 4 | 70 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | het | 95.4545 | 94.5946 | 96.3303 | 94.9373 | 105 | 6 | 105 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | segdup | het | 86.6873 | 94.5946 | 80.0000 | 94.4030 | 35 | 2 | 36 | 9 | 8 | 88.8889 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 96.5517 | 94.5946 | 98.5915 | 83.6217 | 140 | 8 | 140 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 61.2903 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | segdup | het | 94.5946 | 94.5946 | 94.5946 | 91.9037 | 35 | 2 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5961 | 94.5946 | 98.6842 | 87.1622 | 70 | 4 | 75 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.9942 | 94.5946 | 97.4359 | 91.7021 | 35 | 2 | 38 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9615 | 94.5946 | 97.3684 | 70.7692 | 35 | 2 | 37 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 95.8904 | 94.5946 | 97.2222 | 84.3137 | 140 | 8 | 140 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 87.0647 | 94.5946 | 80.6452 | 96.4327 | 175 | 10 | 175 | 42 | 4 | 9.5238 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.5517 | 94.5946 | 98.5915 | 79.1789 | 70 | 4 | 70 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 86.4662 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |